Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    61   9e-11
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   3.9  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    25   6.8  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.8  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   6.8  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    25   6.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   6.8  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.0  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.0  

>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 61.3 bits (142), Expect = 9e-11
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = +1

Query: 193 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 372
           +I ++V +I++L+LLE SEL + LK++LN+ +                            
Sbjct: 76  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135

Query: 373 -TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADI 519
            T++ +K+  FD   K  +IKEVK LL G +LV AKKFVES P V+K +I
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENI 184


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 351 LFFINSSRWSHC-ESAHWHNWSVGQVQS 271
           LFF NSSR+S C ES  W  +S G V S
Sbjct: 136 LFFSNSSRFSACEESGEWVIYS-GDVYS 162


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 409 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 504
           KQ VA IKE+  LLE F +  +    F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 115 LRQEVTQTVTPLTIP--VPEGVDKPVSPKIEKIVFE 216
           LR+  T   T    P  VPE  DKP   K++  VFE
Sbjct: 25  LRRVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFE 60


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 518 ISAFTTVGTLSTNFLACTKLNPSRRPLTSLISATFCLS 405
           + + + +G+LSTN  +  + N SR+P  S   A    S
Sbjct: 250 VKSTSDLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAAS 287


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 175 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLN 279
           ++ +S KI  ++ E+ N  LLE+ E    L +R+N
Sbjct: 601 EEKLSGKITGMLLEMPNSELLELLEDDSALNERVN 635


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 424 LIKE-VKGLLEGFNLVQAKKFVES 492
           LI+E V G LEG N+V+AKK + +
Sbjct: 79  LIRERVYGDLEGMNVVEAKKLLNA 102


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 402 KFRHFNCKTGLHSFRGCLFFINSSRWSHCE 313
           KF     +TG H   G L ++ SS W+  E
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE 560


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 512 AFTTVGTLSTNFLACTKLNPSRRPLTSL-ISATF 414
           A+  VG ++ N  A  ++ P+R  +TSL  +ATF
Sbjct: 79  AYVVVGGMAGNIFARNRIAPARWLITSLSTAATF 112


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 296 LCQWADSQWLQRLLLMKKRQPRKL 367
           L  W   QW  +L+L K++ PR L
Sbjct: 619 LVVWDLRQWCTKLVLSKEQMPRTL 642


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 90  PLQIDIFNYSDSVHIPSLIF 31
           P  I+ FNY D + +PSL++
Sbjct: 302 PDNINFFNYVDYLLVPSLVY 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,949
Number of Sequences: 5004
Number of extensions: 32723
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)