Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329H02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1338 - 25877235-25877738 42 4e-04
02_01_0745 - 5550472-5551053 40 0.001
02_04_0534 + 23725051-23726253 29 2.3
06_01_1138 - 9429447-9433868 28 5.2
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 27 6.9
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 27 6.9
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 6.9
02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132 27 6.9
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 27 6.9
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 27 6.9
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 6.9
04_04_1316 - 32590967-32591548,32592042-32592262,32592494-32592869 27 9.1
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875 27 9.1
>07_03_1338 - 25877235-25877738
Length = 167
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Frame = +1
Query: 190 PKIEKIVFEITNLNLLEVSELSQVLKKRLNLP---DXXXXXXXXXXXXXXXXXXXXXXXX 360
PK+ +I ++ L+ E+ + S +L+ +L L
Sbjct: 34 PKLSRIADQLLELSPAELDDYSALLRLKLRLSLTSSAASGAAATGAAGDAASGSAGAEEA 93
Query: 361 XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADI 519
TSF VK+ K++ K+ +IKEV+ + + L +AK+ VE P VV++ +
Sbjct: 94 AAVKTSFDVKIEKYEAAAKIKIIKEVRAVTD-LGLKEAKELVEKAPVVVRSGL 145
>02_01_0745 - 5550472-5551053
Length = 193
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Frame = +1
Query: 163 PEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXX 342
P G P S K+ + I L E+ +++ L RLN P
Sbjct: 50 PYGPMSPPSQKVVDLADRIAALPPEEIKQIAPALLLRLNQPPPQAISGQGFSFSPQGGGG 109
Query: 343 XXXXXXXXXX----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 510
T F VK+ KFD K+ +IKE++ + L +AK+ VE P ++K
Sbjct: 110 AAGAAKAEEKKAEKTVFDVKLEKFDAAAKIKIIKEIRTFTD-LGLKEAKELVEKAPVILK 168
Query: 511 ADI 519
+
Sbjct: 169 QSL 171
>02_04_0534 + 23725051-23726253
Length = 400
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 136 TVTPLTIPVPEGVDKPVSPK 195
TV T+P+PEG D PV PK
Sbjct: 99 TVVQETLPLPEGGDHPVPPK 118
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 175 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKK 270
+K +PK++KIV +TN+N L E LK+
Sbjct: 1265 EKEAAPKLQKIVLSLTNVNSLSGVEGLPKLKE 1296
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 414 LFVIKFRHFNCKTGLHSFRGCLFFINSSRWSHCESAHWHNWSVGQ 280
L +++F H +T F +FF N + + C+ + H + +GQ
Sbjct: 130 LAILEFIHLFVETMDRHFGNVVFFSNPNNYFSCDCKYAHIYHMGQ 174
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 208 VFEITNLNLLEVSELSQVLKKRLNLP 285
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 208 VFEITNLNLLEVSELSQVLKKRLNLP 285
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132
Length = 224
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 208 VFEITNLNLLEVSELSQVLKKRLNLP 285
+FEI N + L++S L ++LKK+ P
Sbjct: 180 IFEIPNFSHLKISLLERILKKQYGYP 205
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 208 VFEITNLNLLEVSELSQVLKKRLNLP 285
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 154 IPVPEGVDKPVSPK 195
+P+PEG D PVSPK
Sbjct: 104 LPLPEGSDHPVSPK 117
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 208 VFEITNLNLLEVSELSQVLKKRLNLP 285
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>04_04_1316 - 32590967-32591548,32592042-32592262,32592494-32592869
Length = 392
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 402 KFRHFNCKTGLHSFRGCLFFIN 337
K R FN KTGLH F +FFIN
Sbjct: 96 KNRKFNPKTGLHYFTR-IFFIN 116
>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
Length = 356
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 93 IFIKMFCSSAGGNTNSHTSDYPSS*RR 173
IF K FC S+GG + + + SS RR
Sbjct: 255 IFCKSFCRSSGGRSRARARERRSSGRR 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,188
Number of Sequences: 37544
Number of extensions: 190255
Number of successful extensions: 556
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -