Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...    97   5e-21
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    27   6.2  

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 52/121 (42%), Positives = 72/121 (59%)
 Frame = +1

Query: 157 PVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXX 336
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD                
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPLMAAAAAAPAAQAE 92

Query: 337 XXXXXXXXXXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKAD 516
                        +FTVK+TKFDD +K+A+IKE++  + G NLVQAKKFVE+ P  VK D
Sbjct: 93  AEAASDVPQKM--TFTVKLTKFDDTKKIAIIKEIRNAIPGLNLVQAKKFVETAPVNVKED 150

Query: 517 I 519
           +
Sbjct: 151 L 151


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 28  SKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKI 207
           S N TR +    + +N  +QW + +   +   EV + +  L  P        +SPK ++I
Sbjct: 588 SNNATRTVVAATVNEN-GIQWPAET---INIDEVVREIRGLMAPTRRNFAISLSPKTDEI 643

Query: 208 VFEITNLNLLE 240
            ++  NLN L+
Sbjct: 644 DYQAINLNRLK 654


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 19  ENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPL 150
           E  S+NK+   +   + K   LQ  S SR ++ RQ    TV+PL
Sbjct: 71  ERKSRNKSVKWDDTLVSKEEILQVNSASRPALPRQHSASTVSPL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.134    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,358
Number of Sequences: 27780
Number of extensions: 184292
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)