Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.82 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   3.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   3.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 469  DGFLSSTDDVGSFRGSW 419
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 64  LFARRFRTHGNYSALHV 114
           L  RRF   GNYS L V
Sbjct: 276 LCQRRFEEQGNYSCLKV 292


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 243
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 243
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 243
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 243
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 154 RQWCSSKGYATQSIPWKDRSRV 219
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 129  LYTFMYVESGIVXMCAEP 76
            L++FMY E  +   CA P
Sbjct: 1737 LHSFMYHEHAMTEGCASP 1754


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 129  LYTFMYVESGIVXMCAEP 76
            L++FMY E  +   CA P
Sbjct: 1733 LHSFMYHEHAMTEGCASP 1750


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,835
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)