Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    29   0.42 
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   3.9  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    26   3.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   3.9  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   5.2  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   6.8  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   9.0  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +2

Query: 272 YPESALALMRRVAEFKRDNAHLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRRVLI 439
           +P + +    +  E +        GL+ + E DAF+  ++ +V+K ++  G  VL+
Sbjct: 437 FPTTTIGSFPQTKEIRVTRNRFAKGLISQEEYDAFIRKEISDVVKFQEEVGLDVLV 492


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 312 NLNAIMHTC*TDYFLNTKRTPF*TIKW 392
           ++  I HTC   Y L+  + PF TI W
Sbjct: 239 DMKQIEHTCDERYILSRVQHPFITILW 265


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +2

Query: 332 HLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRR 430
           HL D LL    K   L    VNV+KG D K RR
Sbjct: 6   HLEDRLLFAVPKKGRLYESCVNVLKGSDIKFRR 38


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 224 PDDDEILTIFLRPC--KWYPESALALMRRVAEFKRDNAHLLDGLLPEHEKD 370
           P+D    +I  +P   +  PE+A+AL   V E K +++ +L   +PE + +
Sbjct: 480 PEDKSENSIASKPSATEGIPENAIALQSSVPENKAEDSVVLKSSVPEDKSE 530


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 227 DDDEILTIFLRPCKWYPESALALMRRVAEFK 319
           D D +L  FLR  KW  E+AL +  +   ++
Sbjct: 122 DPDGLLLRFLRARKWNVEAALEMFMKTVHWR 152


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 357 SGSSPSNKCALSRLNSATRLINARALSGYHLHGLRKI 247
           SG   S    LS     TRL   R + GYH H ++++
Sbjct: 199 SGDQTSKVFDLSTQQCITRL-GRRGVDGYHSHSVKQV 234


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 306 TRLINARALSGYHLHGL 256
           T  +   +L+GYHLHGL
Sbjct: 181 TVFVQKDSLTGYHLHGL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,001
Number of Sequences: 5004
Number of extensions: 36004
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)