Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0038 - 7631462-7634428,7635975-7636250                           28   5.2  
02_05_0946 + 32995427-32996149                                         28   5.2  
02_05_0463 - 29248675-29249391,29250024-29250142,29250276-292504...    27   6.9  
12_02_0793 - 23200915-23202931,23203136-23203959                       27   9.1  
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751...    27   9.1  
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     27   9.1  
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142...    27   9.1  

>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 278 ESALALMRRVAEFKRDNAHLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRRVLIVSVGG 454
           E+  A  R +A  KR  +HL++  L   E        V  ++  R+ K  +V IV  GG
Sbjct: 225 ENVKATYRVLAPSKRHTSHLVEPNLVGKEIKYATSRLVEMILTHREEKAFKVAIVGTGG 283


>02_05_0946 + 32995427-32996149
          Length = 240

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 224 PDDDEILTIFLRPCKWYPESALALMRRVAEFKRDNAHLLDGLLPEHEKD 370
           PDDD + T  +     +    L   R      R  A L+ GLLP H  D
Sbjct: 37  PDDDVVSTYIVHVMPAHAPRRLPTHRASRRLTRGYASLVRGLLPRHIAD 85


>02_05_0463 -
           29248675-29249391,29250024-29250142,29250276-29250495,
           29250621-29250739,29251013-29251093,29251751-29251802,
           29252392-29252514
          Length = 476

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 366 FSCSGSSPSNKCALSRLNSATRLIN 292
           F  SGS  SN C L  L+ A +L+N
Sbjct: 132 FGISGSDASNICYLRNLDDADKLVN 156


>12_02_0793 - 23200915-23202931,23203136-23203959
          Length = 946

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 411 RPFITFTTLWSRKASFSCSGSSPSNKCALSRLNSATRLI 295
           R FI    +WS  A  +   + P N C+ SR+ + TR+I
Sbjct: 275 RYFIVIDDIWSTSAWRTIKCAFPENNCS-SRILTTTRII 312


>11_02_0028 +
           7517196-7517206,7517256-7517312,7517423-7517503,
           7518009-7518108,7518454-7518507,7519045-7519115,
           7519248-7519455,7519647-7519700,7519934-7520025,
           7520090-7520285,7521158-7521339,7521429-7521496,
           7522848-7522920,7523010-7523071,7523155-7524079,
           7524843-7525133,7525601-7525871
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 335 LLDGLLPEHEKDAFLDHKVVNVMKGRDNK-GRRVLIVSVG 451
           L D  L +H+KD F+   V++ MK R  K G+ V +  +G
Sbjct: 11  LADTSLKKHQKDVFIQAAVIDPMKKRIAKSGQGVPLGGIG 50


>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 257 RPCKWYPESALALMRRVAEFKRDNAHLLDGLLPEHEKDAFLDHKVVNVMKGRDNK 421
           R C+W     LAL  RV E +R+    ++ L     +DA  + KV  +    + +
Sbjct: 53  RRCRWSRRRELALRERVGELERE----VEELRRRRGEDARANEKVAGIFAAHEQR 103


>01_01_0167 +
           1422344-1424260,1424338-1424472,1424568-1424990,
           1425183-1425252,1425356-1425495,1425620-1425679,
           1425776-1425931,1426272-1426541
          Length = 1056

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 305 VAEFKRDNAHLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRRVLIVSVGGSWD 463
           +AE  +DN    D   PE   D F+  + V  +K +++   R L++ V G +D
Sbjct: 11  IAEKNQDNEMSTDAGEPEEVADIFIYREDVVSLKSKED--TRGLVLEVAGEYD 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,513
Number of Sequences: 37544
Number of extensions: 238606
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)