Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329G10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding p... 40 0.005
AY094971-1|AAM15733.1| 354|Homo sapiens cellular retinaldehyde-... 40 0.005
AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens ... 38 0.016
BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding p... 34 0.35
BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding p... 34 0.35
AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetic... 34 0.35
BX664727-6|CAI39536.1| 823|Homo sapiens ankyrin repeat domain 2... 29 9.9
BX649567-2|CAH71137.1| 823|Homo sapiens ankyrin repeat domain 2... 29 9.9
BC002694-1|AAH02694.1| 208|Homo sapiens MED18 protein protein. 29 9.9
AL773545-6|CAI12706.1| 823|Homo sapiens ankyrin repeat domain 2... 29 9.9
AL513478-3|CAH72532.1| 823|Homo sapiens ankyrin repeat domain 2... 29 9.9
AL353622-1|CAI19132.1| 208|Homo sapiens mediator of RNA polymer... 29 9.9
AK000052-1|BAA90910.1| 208|Homo sapiens protein ( Homo sapiens ... 29 9.9
AF132949-1|AAD27724.1| 329|Homo sapiens CGI-15 protein protein. 29 9.9
AB107222-1|BAD06869.1| 208|Homo sapiens p28b protein. 29 9.9
>BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding
protein 1-like 1 protein.
Length = 354
Score = 39.9 bits (89), Expect = 0.005
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 30 LSPETIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQAD 89
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + ++++ N + + K A +D V++ RD+ GR++L++ +
Sbjct: 90 AFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALID-GFPGVLENRDHYGRKILLL-FAAN 147
Query: 458 WDPKKVNADQLFRLFYL 508
WD + + + R L
Sbjct: 148 WDQSRNSFTDILRAILL 164
>AY094971-1|AAM15733.1| 354|Homo sapiens cellular
retinaldehyde-binding protein-like protein protein.
Length = 354
Score = 39.9 bits (89), Expect = 0.005
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 30 LSPETIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQAD 89
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + ++++ N + + K A +D V++ RD+ GR++L++ +
Sbjct: 90 AFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALID-GFPGVLENRDHYGRKILLL-FAAN 147
Query: 458 WDPKKVNADQLFRLFYL 508
WD + + + R L
Sbjct: 148 WDQSRNSFTDILRAILL 164
>AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ34322 fis, clone FEBRA2008861, weakly similar to
CELLULAR RETINALDEHYDE-BINDING PROTEIN. ).
Length = 167
Score = 38.3 bits (85), Expect = 0.016
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 30 LSPETIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQAD 89
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + ++++ N + + K A +D V++ RD+ GR++L++ +
Sbjct: 90 AFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALID-GFPGVLENRDHYGRKILLL-FAAN 147
Query: 458 WDPK 469
WD +
Sbjct: 148 WDQR 151
>BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 33.9 bits (74), Expect = 0.35
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 8 LSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFE 67
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + E+++ N + K A D + D+ GR++L++ +
Sbjct: 68 AFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKD-GFPGGLANLDHYGRKILVL-FAAN 125
Query: 458 WDPKKVNADQLFRLFYL 508
WD + + R L
Sbjct: 126 WDQSRYTLVDILRAILL 142
>BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 33.9 bits (74), Expect = 0.35
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 8 LSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFE 67
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + E+++ N + K A D + D+ GR++L++ +
Sbjct: 68 AFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKD-GFPGGLANLDHYGRKILVL-FAAN 125
Query: 458 WDPKKVNADQLFRLFYL 508
WD + + R L
Sbjct: 126 WDQSRYTLVDILRAILL 142
>AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetical
proteins from ).).
Length = 327
Score = 33.9 bits (74), Expect = 0.35
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Frame = +2
Query: 107 LSPDTKELAEKELRETP-XXXXXXXXXXXXXXXXXXXXYFPDDDEILTIFLRPCKWYPES 283
LSP+T E A EL E P + DD + FLR K++
Sbjct: 8 LSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFE 67
Query: 284 ALALMRRVAEFKRDNAHLLDGLLPEHE--KDAFLDHKVVNVMKGRDNKGRRVLIVSVGGS 457
A L+ + E+++ N + K A D + D+ GR++L++ +
Sbjct: 68 AFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKD-GFPGGLANLDHYGRKILVL-FAAN 125
Query: 458 WDPKKVNADQLFRLFYL 508
WD + + R L
Sbjct: 126 WDQSRYTLVDILRAILL 142
>BX664727-6|CAI39536.1| 823|Homo sapiens ankyrin repeat domain 20
family, member A2 protein.
Length = 823
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 302 RVAEFKRDNAHLLDGLLPEHEKDAFLDHK--VVNVMKGRDNKGRRVLIV 442
R+ +R+NA L+ L H+K+ DHK V N+ +G G++ L++
Sbjct: 733 RICHLQRENAWLVQQLDDVHQKE---DHKEIVTNIQRGFIESGKKDLVL 778
>BX649567-2|CAH71137.1| 823|Homo sapiens ankyrin repeat domain 20
family, member A3 protein.
Length = 823
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 302 RVAEFKRDNAHLLDGLLPEHEKDAFLDHK--VVNVMKGRDNKGRRVLIV 442
R+ +R+NA L+ L H+K+ DHK V N+ +G G++ L++
Sbjct: 733 RICHLQRENAWLVQQLDDVHQKE---DHKEIVTNIQRGFIESGKKDLVL 778
>BC002694-1|AAH02694.1| 208|Homo sapiens MED18 protein protein.
Length = 208
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 HLLDGLLPEHEKDAFLDHKVVNVMKGR 412
H L GL E + FLDH++V ++KG+
Sbjct: 37 HRLRGLCDNMEPETFLDHEMVFLLKGQ 63
>AL773545-6|CAI12706.1| 823|Homo sapiens ankyrin repeat domain 20
family, member A2 protein.
Length = 823
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 302 RVAEFKRDNAHLLDGLLPEHEKDAFLDHK--VVNVMKGRDNKGRRVLIV 442
R+ +R+NA L+ L H+K+ DHK V N+ +G G++ L++
Sbjct: 733 RICHLQRENAWLVQQLDDVHQKE---DHKEIVTNIQRGFIESGKKDLVL 778
>AL513478-3|CAH72532.1| 823|Homo sapiens ankyrin repeat domain 20
family, member A1 protein.
Length = 823
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 302 RVAEFKRDNAHLLDGLLPEHEKDAFLDHK--VVNVMKGRDNKGRRVLIV 442
R+ +R+NA L+ L H+K+ DHK V N+ +G G++ L++
Sbjct: 733 RICHLQRENAWLVQQLDDVHQKE---DHKEIVTNIQRGFIESGKKDLVL 778
>AL353622-1|CAI19132.1| 208|Homo sapiens mediator of RNA polymerase
II transcription, subunit 18 homolog (S. cerevisiae)
protein.
Length = 208
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 HLLDGLLPEHEKDAFLDHKVVNVMKGR 412
H L GL E + FLDH++V ++KG+
Sbjct: 37 HRLRGLCDNMEPETFLDHEMVFLLKGQ 63
>AK000052-1|BAA90910.1| 208|Homo sapiens protein ( Homo sapiens
cDNA FLJ20045 fis, clone COL00548. ).
Length = 208
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 HLLDGLLPEHEKDAFLDHKVVNVMKGR 412
H L GL E + FLDH++V ++KG+
Sbjct: 37 HRLRGLCDNMEPETFLDHEMVFLLKGQ 63
>AF132949-1|AAD27724.1| 329|Homo sapiens CGI-15 protein protein.
Length = 329
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 396 FTTLWSRKASFSCSGSSPSNKCALSRLNSATRL 298
F W ++S + +G SP +C+ RLNSA+R+
Sbjct: 166 FAWCWGPRSSVAFAGPSP--RCSCRRLNSASRI 196
>AB107222-1|BAD06869.1| 208|Homo sapiens p28b protein.
Length = 208
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 HLLDGLLPEHEKDAFLDHKVVNVMKGR 412
H L GL E + FLDH++V ++KG+
Sbjct: 37 HRLRGLCDNMEPETFLDHEMVFLLKGQ 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,740,348
Number of Sequences: 237096
Number of extensions: 1292886
Number of successful extensions: 2580
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2580
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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