Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.7  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   3.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   6.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   9.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.0  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -3

Query: 411  TNLTMNPLTITPTLNINMSTKLRTLTPETTSSNTRSVMVTS*RACTVFTRLMXQLGLLNT 232
            +N+T+   T+ P+L  ++ST    +   + SSNT S   T  +  +  + L   +  +NT
Sbjct: 919  SNITVTSSTLKPSLTSSVSTASSYIA-SSASSNTLS---TEPKTFSSSSTLSESISSINT 974

Query: 231  VQTSTKDSAPLSS 193
               + K  + LSS
Sbjct: 975  NSLTVKPESSLSS 987


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 465 VEFILNKPLSISRPKDMLTNLTMNPLTITPTLNINMSTKLRTLTPETTSSNTRSVMV 295
           +E I +K  S+  P  +LT L + PLT+    +   S    + + E ++ N RS+ +
Sbjct: 688 IELITSKSSSV-HPSSVLTYLALIPLTLDQVKSGTSSVMDLSSSRELSNLNERSITI 743


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 411 TNLTMNPLTITPTLNINMSTKLRTLTPETTSS 316
           T+ T   LT + TLN +  T L + +  TTSS
Sbjct: 110 TSSTTTTLTTSTTLNTSSGTTLNSTSKTTTSS 141


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 414 LTNLTMNPLTITPTLNINMSTKLRTLTPETTSSNTRSV 301
           LTN + +P T+TPT+N +   K  T + +  S   R V
Sbjct: 884 LTNRSSSP-TVTPTVNTDRQPKTLTNSADELSPQKRRV 920


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 444 PLSISRPKDMLTNLTMNPLTITPTLNI--NMSTKLRTLTPETTSSNT 310
           P+S+  P D   N T++     P+LN   NMS +L  +   T +SN+
Sbjct: 370 PVSVPLPNDAENNHTLSRNPYIPSLNFKDNMSAELSVVA--TLASNS 414


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 516  TSPKLITLGRRKALASTVEFILNKPLSISRPKDMLTNLTMNPLTITP 376
            T  +  T+   K   STV    + P +IS+P   + N    P  + P
Sbjct: 1050 TIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPP 1096


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 342 TLTPETTSSNTRSVMVTS*RACTVFTRLMXQLGLLNTVQTSTKDSA 205
           T+TPET SS++ + +  S    +       QL + ++  TS++ S+
Sbjct: 47  TITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSS 92


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 462 EFILNKPLSISRPKDMLTNLTMNPLTITPTLNINMSTKLRTLTP 331
           E  +N+ LS S    ++ +L   PL+ +P L + +   +  +TP
Sbjct: 432 EDAVNESLSHSTKSSIIQSLAWGPLSDSPVLAVAVDETVYFITP 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,646
Number of Sequences: 5004
Number of extensions: 32442
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)