Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.4  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 341 VLNFVLILIFRVGVIVNGFIVRFVSMSFGLLIDRGLFKMNSTV 469
           +L FV+ ++  V V+ NG +V     +  L     LF +N  +
Sbjct: 20  ILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAI 62


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 325 CLRCEGPQLCTHIDI 369
           C  CE P++C + DI
Sbjct: 219 CALCEKPEVCDYPDI 233


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 325 CLRCEGPQLCTHIDI 369
           C  CE P++C + DI
Sbjct: 219 CALCEKPEVCDYPDI 233


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 325 CLRCEGPQLCTHIDI 369
           C  CE P++C + DI
Sbjct: 219 CALCEKPEVCDYPDI 233


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 387 TITPTLNINMSTKLRTLTPETTSS 316
           TIT T     +T   T TP TT +
Sbjct: 660 TITTTTTTTTTTTTTTTTPNTTQN 683



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = -2

Query: 208 SAIVKHSAPGQHVHIESHHEN 146
           + ++K     +H H+++HH +
Sbjct: 130 TGLIKQETLQRHHHLQNHHHH 150


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 298 GDVVKGVYGLHEADXSVRTVEYSSDKHKGFSAIVKHSAP 182
           G  +K V GL E      TVE  S+   GF   +    P
Sbjct: 234 GRQIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTP 272


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 298 GDVVKGVYGLHEADXSVRTVEYSSDKHKGFSAIVKHSAP 182
           G  +K V GL E      TVE  S+   GF   +    P
Sbjct: 324 GRQIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTP 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,515
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)