Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329G06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 182 3e-47
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 120 1e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 8e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 4e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 9e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 7e-09
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 0.42
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.42
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 0.97
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 0.97
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.2
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 2.2
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 5.2
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 5.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 6.8
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 9.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.0
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 182 bits (443), Expect = 3e-47
Identities = 90/161 (55%), Positives = 115/161 (71%), Gaps = 16/161 (9%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 221
++D GTGY+KLG+AGN P ++ P+ IA + A G + + + +A
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68
Query: 222 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 395
EDLDFFIG++A + + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR EPEDH+FL+
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLL 128
Query: 396 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASW 518
TEPPLN PENRE AEIMFESFN GLYIAVQAVLALAASW
Sbjct: 129 TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASW 169
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 120 bits (289), Expect = 1e-28
Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Frame = +3
Query: 60 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 239
M + + A VID G+G K GFAG+ P+ + PS VG + + D
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDS 52
Query: 240 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 416
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNP 112
Query: 417 PENREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +I+FE+FN P Y+A+QAVL+L AS
Sbjct: 113 KSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.9 bits (233), Expect = 8e-22
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 263
V+D GTG+ K+G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60
Query: 264 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 440
VKYP+ +GI+ D++ M + + F+ L+ +P L+TEPP+N NRE +
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 441 EIMFESFNVPGLYIAVQAVLALAA 512
E MFE + G+Y+A+QAVL+L A
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYA 144
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.3 bits (219), Expect = 4e-20
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D+ P C ID G+G+ K GFAG+ P+ + P+ + + +V S ++ D F+
Sbjct: 8 DNQPIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFV 58
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNT 416
G EA G ++ P+ GI+++W ME I ++ + L PE+H L+TEPPL
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEPPLAN 117
Query: 417 PENREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
N+E +AE +E+ NVP L ++Q VLAL AS
Sbjct: 118 IRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.5 bits (175), Expect = 9e-15
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Frame = +3
Query: 63 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 242
GD + A VID G+ +T++GF+G P+ ++PS G+ S R
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYC--------GEFSDGRR---------L 50
Query: 243 IGDEAFEAT--GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 416
G+E + G +K +R+G VE+WD+ + + L+ P +H L+TEP N
Sbjct: 51 FGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Query: 417 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWK 521
PENR E MFES P Y+A Q A AS K
Sbjct: 111 PENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.5 bits (165), Expect = 1e-13
Identities = 43/152 (28%), Positives = 73/152 (48%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
+ +P+ VID G+ +T+ G+AG + P I+PS ++ T R V++L
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA 61
Query: 246 GDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPEN 425
G VK +GI++DW+ E+ + + L+ P ++ ++TEP N
Sbjct: 62 -----PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSV 116
Query: 426 REYLAEIMFESFNVPGLYIAVQAVLALAASWK 521
R+ + E FE +VP Y+ QAV A+ K
Sbjct: 117 RQQIMEAAFEQLHVPAFYLTKQAVCVAFANSK 148
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 7e-09
Identities = 33/140 (23%), Positives = 63/140 (45%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 263
VID G+ + G+ G K+P+ + + ++ K+ +R T D +G +
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL----SRTSTLVGNDTLIEVGSRSI- 82
Query: 264 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAE 443
+ P ++ +WDLME+ ++ K L + +H MTEP N R + E
Sbjct: 83 -----ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTE 136
Query: 444 IMFESFNVPGLYIAVQAVLA 503
++FE +N P + + + +
Sbjct: 137 LLFELYNAPSVAYGIDGLFS 156
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.1 bits (62), Expect = 0.42
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +3
Query: 201 TRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPED 380
T K +E LD E + + VK + + L RY VF + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 381 HHFLMTEPPLNTPENREYLAEIMFESFN 464
+ + LN EN+E + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.1 bits (62), Expect = 0.42
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 451 LSHLMCQAFTLLYKPFLLWLRH 516
++ L+C + L+ KPF+LW RH
Sbjct: 627 IAALICVPWLLIVKPFVLWRRH 648
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/88 (20%), Positives = 35/88 (39%)
Frame = +3
Query: 129 NKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIV 308
N +P I + E+ + + ++ K +E F+G AF+ G + +
Sbjct: 149 NHQPAVSIEESKEAVESTSQSSEISFKLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTL 208
Query: 309 EDWDLMERYIEQCVFKYLRAEPEDHHFL 392
+ W L +E+ + K P + FL
Sbjct: 209 KVWKLSTFGVEKSIAKPFEQMPTGNRFL 236
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 0.97
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 178 VSFIAMVDGIINCGSLLPAKPSLVYPVPTSI-TQAGKWSP 62
V+F M+ +I+C +++ AKPSL PV + G W+P
Sbjct: 2278 VAFTLMLAQVISCITIMIAKPSL--PVSDRVFPNLGAWNP 2315
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 2.2
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKA-VEDLDFFIGDEAF 260
V+D G + K GFAG K + IP+ + +K G++ A D A
Sbjct: 9 VLDNGAYHIKAGFAGGKVVE--IPNCLT---RSKDGNRLFLGNELANCNDFTTLQFRRAH 63
Query: 261 EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 440
E GY V + + WDL+ R + + D+ L+T+P P
Sbjct: 64 EK-GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEHNTI 114
Query: 441 EIMFESF 461
+++FE F
Sbjct: 115 QLVFEEF 121
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 363 RAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 208 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 104
++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 381 HHFLMTEPPLNTPENREYLAEIMFESFNVPGL 476
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 248 TDEKIQIFDSLSHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 78
TDE + DSLSHP +++ G NN + T +T+ +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 234 DFFIGDEAFEATGYSVKYPVRHGI-VEDWDLMERYIEQC 347
D F+G + +EA V +P +G+ ++L Y++ C
Sbjct: 683 DVFVGYKYYEAVEREVLFPFGYGLSYTTFELSNLYLKNC 721
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 PEDHHFLMTEP-PLNTPENREYLAEIMFESFN 464
PE+ F + E PL+ E + + E++FE++N
Sbjct: 174 PEEDFFRVLETAPLHAEEVSKKMKELLFETYN 205
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 386 FLNDRASAQHSRKQRIFSRNHV 451
F+ND S H R+Q+ +R H+
Sbjct: 335 FVNDPNSTSHDRRQKRPTRRHI 356
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 315 WDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYL 437
W LME + F Y A + HF T P L NR+YL
Sbjct: 49 WVLME-LVAPLTFLY--AIRNNRHFESTLPSLGDGSNRDYL 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,830
Number of Sequences: 5004
Number of extensions: 47495
Number of successful extensions: 146
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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