Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329G06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 249 1e-66
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 122 2e-28
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 122 2e-28
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 122 2e-28
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 122 2e-28
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 122 2e-28
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 122 2e-28
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 121 4e-28
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 120 8e-28
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 109 2e-24
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 104 3e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 103 8e-23
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 91 6e-19
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 82 2e-16
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 60 1e-09
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 60 1e-09
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 59 2e-09
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 56 1e-08
AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical ... 28 4.7
Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein h... 27 6.2
Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 249 bits (609), Expect = 1e-66
Identities = 119/155 (76%), Positives = 130/155 (83%), Gaps = 6/155 (3%)
Frame = +3
Query: 72 LPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKE-TAKVGDQSTR---RMTKAVEDLDF 239
LPACVID GTGYTKLG+AGN EPQFIIPS IA+K+ A Q+ R R+ ++DLDF
Sbjct: 6 LPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDF 65
Query: 240 FIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLN 413
FIGDEA AT Y+VKYP+RHGIVEDWDLMERY EQC+FKYLRAEPEDH FL+TEPPLN
Sbjct: 66 FIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLN 125
Query: 414 TPENREYLAEIMFESFNVPGLYIAVQAVLALAASW 518
TPENREY AEIMFESFNVPGLYIAVQAVLAL ASW
Sbjct: 126 TPENREYTAEIMFESFNVPGLYIAVQAVLALTASW 160
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 122 bits (294), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 122 bits (293), Expect = 2e-28
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 121 bits (291), Expect = 4e-28
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A ++D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 422
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 423 NREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 120 bits (288), Expect = 8e-28
Identities = 62/153 (40%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Frame = +3
Query: 60 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 239
M + + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 240 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 416
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNP 112
Query: 417 PENREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
NRE + +IMFE+FN P +Y+ +QAVL+L AS
Sbjct: 113 KSNREKMTQIMFETFNTPAMYVNIQAVLSLYAS 145
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 109 bits (261), Expect = 2e-24
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Frame = +3
Query: 111 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY-SVKY 287
+ GFAG+ P+ + PS VG + + + D ++GDEA G ++KY
Sbjct: 5 RAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 56
Query: 288 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 467
P+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN
Sbjct: 57 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 116
Query: 468 PGLYIAVQAVLALAAS 515
P +Y+A+QAVL+L AS
Sbjct: 117 PAMYVAIQAVLSLYAS 132
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 104 bits (250), Expect = 3e-23
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 263
VID G+G K GFAG ++P+ ++ VG R+ D D FIG +A
Sbjct: 12 VIDNGSGVIKAGFAGEQQPK--------VRFANFVGRPKYHRVMAGGLDGDIFIGPKAES 63
Query: 264 ATG-YSVKYPVRHGIVEDWDLMERYIEQCVFK-YLRAEPEDHHFLMTEPPLNTPENREYL 437
G +S++YP+ HGIV +W ME+ E + L+ PE+H L+T+ PLN +NRE
Sbjct: 64 NRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERS 123
Query: 438 AEIMFESFNVPGLYIAVQAVLALAAS 515
AEI FE+FNVP LYI +QAVL+L A+
Sbjct: 124 AEIFFETFNVPALYIQMQAVLSLYAT 149
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 103 bits (247), Expect = 8e-23
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Frame = +3
Query: 234 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 410
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 67
Query: 411 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 515
N NRE + +IMFE+FN P +Y+A+QAVL+L AS
Sbjct: 68 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 102
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 90.6 bits (215), Expect = 6e-19
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Frame = +3
Query: 84 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 254
V+D GTG+ K G+AG P I PS + ++ T +VG+ +E D +G+E
Sbjct: 10 VVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN---------IEIKDLMVGEE 60
Query: 255 AFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF-KYLRAEPEDHHFLMTEPPLNTPENR 428
+ + YP+ +GIV +WD M + + L +P++ L+TEPPLN NR
Sbjct: 61 CSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNR 120
Query: 429 EYLAEIMFESFNVPGLYIAVQAVLALAA 512
E + ++MFE + +Y+AVQAVL L A
Sbjct: 121 EKMFQVMFEQYGFNSIYVAVQAVLTLYA 148
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 82.2 bits (194), Expect = 2e-16
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Frame = +3
Query: 63 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETA--------KVGDQSTRRMTK 218
GD + V D G+ ++GFAG + P+ IPS IA++E + ++ +
Sbjct: 8 GDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQ 67
Query: 219 AVEDLDFFIGDEAF--EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFL 392
+ +FFIG +++ ++ G++EDW+L E+ +E L + P +H L
Sbjct: 68 TKREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVL 127
Query: 393 MTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAA 512
+E N RE L EIMFE F VP Y++ VL+ A
Sbjct: 128 FSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFA 167
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATG-YSVKYPVRHGIVEDWDLMER 332
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATG-YSVKYPVRHGIVEDWDLMER 332
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATG-YSVKYPVRHGIVEDWDLMER 332
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 56.4 bits (130), Expect = 1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 66 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 245
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 246 GDEAFEATG-YSVKYPVRHGIVEDWDLM 326
GDEA G ++KYP+ HGIV +WD M
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical
protein M70.4 protein.
Length = 822
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 384 DDLRVPHGDT*TRTVRCTFPLNPSLLRYRGAQDTLQSI 271
+DL +P G+ + +F L SL ++ G +DT S+
Sbjct: 418 EDLNIPQGNNWANPIHTSFCLPKSLHKWAGRRDTSSSM 455
>Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical
protein C07A9.2 protein.
Length = 147
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 291 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDH 383
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein
homolog protein.
Length = 147
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 291 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDH 383
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical
protein T28B8.3b protein.
Length = 398
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 344 LFDVPFH*IPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLSH 210
L ++P IP DT+ H+I+ ++ F+ D+KI I SLSH
Sbjct: 55 LINIPSRFIPDSLDTIIHKIIDKIP--DLKFMEDQKI-IRASLSH 96
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
T28B8.3a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 344 LFDVPFH*IPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLSH 210
L ++P IP DT+ H+I+ ++ F+ D+KI I SLSH
Sbjct: 1495 LINIPSRFIPDSLDTIIHKIIDKIP--DLKFMEDQKI-IRASLSH 1536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,721
Number of Sequences: 27780
Number of extensions: 262894
Number of successful extensions: 590
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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