Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143           29   1.7  
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015...    27   9.1  

>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
          Length = 379

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 88  HEFANNKYVGFFHKNNYVSLMIEISTLFTISVDSKNKSSQGHRCTCSMFKKI 243
           H FA      FF  NN+ S + +++T F +  +  NK S  +      F+KI
Sbjct: 70  HVFAAVFLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRSHFYSLRFQGFRKI 121


>07_03_1749 +
           29201116-29201193,29201294-29201371,29201442-29201540,
           29202958-29203020,29203101-29203298,29203359-29203472,
           29203744-29203806,29203912-29204208,29204774-29204935,
           29205061-29205244,29205771-29205820
          Length = 461

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 214 CDPGNFCSSNQQKL*IKSIFQSSMIRNYFCEKNP 113
           C P  FC+SN  K   K I +  ++R Y   K P
Sbjct: 300 CTPPEFCTSNMTKGTFKKI-REELMRGYALTKEP 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,810
Number of Sequences: 37544
Number of extensions: 233277
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)