Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.2  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    26   3.0  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   5.2  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   5.2  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   6.8  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 483 SSRSSITFGSLHARRSLWSPRSSLASTIPAF 391
           SS  S  + S+ +R  L+SPR SL  ++PAF
Sbjct: 386 SSLLSFEWISIISRALLFSPRPSLLISVPAF 416


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 23/81 (28%), Positives = 29/81 (35%)
 Frame = +1

Query: 139 SDGKKCVPRIPLAIAEPLPLVRASSRCYAPCDTVTWLTRKVRQLNDQXXXXXXXXXXXXE 318
           S  +K V  +PL+ +   PLV   S  Y P +T   L +K  Q N              E
Sbjct: 18  SGDEKSVKILPLSESSLPPLVTTISGFYPPENTRFQLLKKSNQSNRDASLIGRTERVQFE 77

Query: 319 HPMLKDDGGEGNYAYRVLDAT 381
                    E NY   V D T
Sbjct: 78  AKNQSTATVEANYCLAVADKT 98


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 195 WKRFCNSQRYPWDT 154
           WKR+C  + Y W+T
Sbjct: 336 WKRWCRVKEYSWNT 349


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 419 PRSHRQYPPSN--GAVASSTLYA*LPSPPSS 333
           P + R+ P  N  G+V  S LY  +PSPPSS
Sbjct: 209 PNTFRRSPLKNDTGSVELSNLY--MPSPPSS 237


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 147 QEMCPTDTAGYCRTSSTCARLLSMLRAV*--HSDVVNQESETAERSTARNTRRLKE 308
           Q +C        RT +  AR     RAV   HS +  +E   AER+  +  + LKE
Sbjct: 273 QTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKE 328


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 467 SPLGPSMPGGPCGPLGPRSHRQ--YPPSNGAVASSTLYA*LPSPPSS 333
           SP   S+P  P   L PR H+   Y PS     +S LYA   SP SS
Sbjct: 654 SPKRQSVPSTPKASLSPRVHKSMTYSPSE----ASPLYA-NKSPKSS 695


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 359 HIEYLTQRLRWKAGIVDASEDRGDHKDRRAWRDPKVILEREDXGAHVVLKDPST 520
           H E +T+ L+WK+ ++ +S D    +  R W D +   +  +   H  L  PST
Sbjct: 305 HYESVTKILQWKSYLISSSLD----QTIRVW-DLEYSADNNEADDHPSLGPPST 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,082
Number of Sequences: 5004
Number of extensions: 39709
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)