Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    30   0.013
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    28   0.051
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.62 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = +1

Query: 40  VDECATNNGGCEQRCVNDPGS------FHCECSPPLSLASDGKKCVPRIPLAI 180
           +++C   NG C   C+  P          C C   L L SDG  CV ++   I
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKVSTTI 85


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
 Frame = +1

Query: 40  VDECATNNGGCEQRCVNDPGS------FHCECSPPLSLASDGKKCVPR 165
           +++C   NG C   C+  P          C C   L L SDG  CV +
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEK 80


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 70  CEQRCVNDPGSFHCECSPPLSLASDGKKCVPRIPLAIAEPLPLVRASSRCYAPCDTVTWL 249
           CE  C++D  +        LSL S+       +    AEP P+ +A S+C+    T   +
Sbjct: 666 CETFCLDDDDTL---LEVALSLGSEALSAAT-VRFIEAEPQPIGKALSKCHNRNVTTCNM 721

Query: 250 TRKVRQLND 276
            RK     D
Sbjct: 722 FRKTNLSGD 730


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 106 GSFQDH*RSVAHTHRCSSHTRLHQHNT 26
           G    H  +  H H   + T  HQH+T
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHST 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,299
Number of Sequences: 438
Number of extensions: 3023
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)