Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    71   1e-13
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.18 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   0.97 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   3.0  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   6.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = +1

Query: 43  EPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAES 222
           E  T+  LAA P + +KQ+LGE L+P +      L+GKITGMLLE+ NSELL +LE   +
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629

Query: 223 LKAKVDEAVAVL 258
           L  +V+EA+ VL
Sbjct: 630 LNERVNEAIGVL 641


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 253 QQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 125
           QQQ H++ + E +H +  E      + K   L  Q  +GAF E
Sbjct: 249 QQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 64  LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 240
           L +A +Q+  +M G+  F P ++R H D  GK   +     +  LLH L    +   K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 249
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  STTSSAYPRTRTSDLYYACSSTTP 83
           S TSS+ P++RTS+L    S  TP
Sbjct: 88  SATSSSVPQSRTSELSSTNSIPTP 111


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 303 IRKASWHQ-EVVSCFNSVTLLSICFIFFD 386
           + K S H+ E ++C ++  L+++C IF D
Sbjct: 532 LMKLSTHKNERIACLSASQLITVCHIFSD 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,268
Number of Sequences: 5004
Number of extensions: 33062
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)