Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329G02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 84 6e-17
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 77 9e-15
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 76 2e-14
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 73 2e-13
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 69 3e-12
09_06_0119 - 20969450-20969643,20969767-20970088,20970147-209703... 32 0.24
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 32 0.32
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 30 1.3
02_03_0251 + 16849905-16851308 28 4.0
11_01_0142 - 1169007-1169032,1169351-1169538,1169978-1170131,117... 27 6.9
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 27 6.9
08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937... 27 9.1
02_04_0452 + 23044190-23045227 27 9.1
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 84.2 bits (199), Expect = 6e-17
Identities = 38/68 (55%), Positives = 52/68 (76%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+ +LA AP +EQK MLG RL+PL++R HPDLA KITGMLLE+ NSE++ +L + L AK
Sbjct: 440 NNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAK 499
Query: 235 VDEAVAVL 258
++E V +L
Sbjct: 500 IEECVKLL 507
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 77.0 bits (181), Expect = 9e-15
Identities = 36/68 (52%), Positives = 51/68 (75%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
+T LA A +Q+ MLGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 567 ATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAK 626
Query: 235 VDEAVAVL 258
V EA+ VL
Sbjct: 627 VAEAMEVL 634
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/68 (50%), Positives = 52/68 (76%)
Frame = +1
Query: 55 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 234
++ LA +P +Q+ MLGE L+PL+ ++ D A K+TGMLLE+D +E+LH++E ++LKAK
Sbjct: 173 ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAK 232
Query: 235 VDEAVAVL 258
V EA+ VL
Sbjct: 233 VAEAMEVL 240
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/70 (50%), Positives = 53/70 (75%)
Frame = +1
Query: 49 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 228
LTS + A P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 578 LTSALANANP-EQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 636
Query: 229 AKVDEAVAVL 258
+KV EA+ VL
Sbjct: 637 SKVAEAMDVL 646
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/80 (40%), Positives = 56/80 (70%)
Frame = +1
Query: 19 PAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELL 198
P +Q T LA+A ++Q+++LG+ LFPL++++ + A K+TGMLLE+D +E+L
Sbjct: 560 PVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVL 619
Query: 199 HMLEHAESLKAKVDEAVAVL 258
+++E ++L+ KV EA+ VL
Sbjct: 620 NLVESPDTLRDKVAEAMKVL 639
>09_06_0119 -
20969450-20969643,20969767-20970088,20970147-20970380,
20970659-20970789,20970874-20971147
Length = 384
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 37 GQEPLTSTMLAAAPLQEQKQMLGE 108
G +PLTST++A P+QEQ M E
Sbjct: 126 GYDPLTSTLVAVLPMQEQLNMFAE 149
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 115 FPLIQRMHPDLAGKITGMLL--EIDNSELLHMLEHAE-SLKAKVDEAVAVL 258
F +QR+ P+ GKI G++L E D EL+ + E +L AK+++ A L
Sbjct: 11 FARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAAL 61
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 112 LFPLIQRMHPDLAGKITGMLLEIDNSEL 195
+F +Q + P+LA I GMLL DN+E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDNNEM 37
>02_03_0251 + 16849905-16851308
Length = 467
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 10 APQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLI 126
AP PA H G L +T +A AP Q L +R PLI
Sbjct: 2 APPPAAHAAGLRVLRTTRVAPAPPAGQ-PALPKRALPLI 39
>11_01_0142 -
1169007-1169032,1169351-1169538,1169978-1170131,
1170565-1170656,1170782-1170961,1171080-1171244,
1171309-1171709
Length = 401
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 112 LFPLIQRMHPDLAGKITGMLLEIDNSEL 195
+F +Q + P+LA I GMLL D +E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDKNEM 37
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 21 SSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 128
S YP S L ACS TTPG DA+ T S S
Sbjct: 83 SLRYPNP-WSYLTLACSDTTPGIARDAFNTFFSETS 117
>08_02_0316 +
15690452-15690555,15690871-15690965,15693707-15693783,
15693854-15693908,15695158-15695227,15695388-15695457,
15696047-15696340
Length = 254
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 148 AGKITGMLLEIDNSELLHML 207
AGK+ MLL +D EL+H L
Sbjct: 30 AGKVERMLLVVDQQELVHFL 49
>02_04_0452 + 23044190-23045227
Length = 345
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 3 PTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWG 107
P ++++++ P T T A +++ PG + DAWG
Sbjct: 208 PAAASSATTAPATTTG----AAATSAPGADDDAWG 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,856
Number of Sequences: 37544
Number of extensions: 207579
Number of successful extensions: 719
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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