Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...   100   7e-22
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...   100   7e-22
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...   100   7e-22
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...   100   7e-22
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    94   5e-20
AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z75540-4|CAA99849.1|  169|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   4.7  
AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    27   6.2  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    27   8.1  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    27   8.1  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    27   8.1  

>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score =  100 bits (239), Expect = 7e-22
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616

Query: 187 SELLHMLEHAESLKAKVDEAVAVL 258
           SEL+ ML+ +E  ++KVDEA +VL
Sbjct: 617 SELIMMLQDSELFRSKVDEAASVL 640


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score =  100 bits (239), Expect = 7e-22
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 498 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 556

Query: 187 SELLHMLEHAESLKAKVDEAVAVL 258
           SEL+ ML+ +E  ++KVDEA +VL
Sbjct: 557 SELIMMLQDSELFRSKVDEAASVL 580


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score =  100 bits (239), Expect = 7e-22
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 495 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 553

Query: 187 SELLHMLEHAESLKAKVDEAVAVL 258
           SEL+ ML+ +E  ++KVDEA +VL
Sbjct: 554 SELIMMLQDSELFRSKVDEAASVL 577


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score =  100 bits (239), Expect = 7e-22
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +1

Query: 13  PQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 186
           PQ  V I GQEPLTS MLAAA  QEQKQ+LGER++ LI++++P    AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616

Query: 187 SELLHMLEHAESLKAKVDEAVAVL 258
           SEL+ ML+ +E  ++KVDEA +VL
Sbjct: 617 SELIMMLQDSELFRSKVDEAASVL 640


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
 Frame = +1

Query: 16  QPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPD--LAGKITGMLLEIDNS 189
           Q  + I GQE LTS MLA A  QEQKQ+LGER++ LI++M P+   AGKITGM+LEIDN+
Sbjct: 593 QSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNA 652

Query: 190 ELLHMLEHAESLKAKVDEAVAVL 258
           EL+ ML+ AE  ++KV+EA  VL
Sbjct: 653 ELIMMLQDAELFRSKVEEAFGVL 675


>AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical
           protein T27C4.2 protein.
          Length = 643

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   PPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEID 183
           PP P   V  +  EP T+T L   PL+  +++LGE +   ++ +  D+   +     E  
Sbjct: 251 PPQPTTTVPQEAAEPTTTTTLQ--PLESTRRILGEEIEKSVENLEKDIEESVKNG-SEKM 307

Query: 184 NSELLHMLEHAE-SLKAKVDEAVAVL 258
           N +    +E  +  L+ +++EA   L
Sbjct: 308 NDKTAQAVEQIDLELEKRLEEAAKQL 333


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 158 IFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGSCPWICTAGCG 12
           ++P   G  + + G++  P IC+ + + A A + +++     IC   CG
Sbjct: 56  LYPVGGGGAIVVGGDNARPFICYRTGNAAGAVMDDIKADAISICPKSCG 104


>Z75540-4|CAA99849.1|  169|Caenorhabditis elegans Hypothetical
           protein F37D6.3 protein.
          Length = 169

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 28  HIQGQEPLTSTMLAAAPLQEQKQMLGERLF 117
           H+  Q P    MLAAA  QEQ  +LG+R++
Sbjct: 96  HMMAQGPGVYPMLAAAAPQEQNHLLGDRIY 125


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 24/69 (34%), Positives = 31/69 (44%)
 Frame = -1

Query: 221 DSACSNI*RSSELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGS 42
           DSAC N+ RS      + +P+  PA   CI  I G +     C  S S  +  I +V  S
Sbjct: 94  DSACINLVRSGPSCDQQCMPLCLPA---CINAIQGPTECAPQCMPSCS--SNCIQQVFPS 148

Query: 41  CPWICTAGC 15
           CP  C   C
Sbjct: 149 CPQQCQPVC 157


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT-TVSTYSENAP 140
           T+S+T+S    T T+    + S++TP T T    T T S+ S +AP
Sbjct: 521 TTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAP 566


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 122
           T+STT++  P T T+      +STT  T T    TT ST
Sbjct: 70  TTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTST 108


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 202 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 101
           Y +  N QF   YQ F QP Q  +++  +   PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 202 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 101
           Y +  N QF   YQ F QP Q  +++  +   PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 128
           TS+TTS     T TS      S++TP T T    TT ST S
Sbjct: 283 TSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTTPSTTS 323


>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 74  HHSRNRNRCLGNDCFHLFRECTL 142
           HH    N  LG  C  LFR CTL
Sbjct: 72  HHYNGNNIELGTACGRLFRVCTL 94


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   PTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSENA 137
           PT++  ++    T TS      S+TT    T    TTV TYS NA
Sbjct: 274 PTTTVVTTVPTTTATSTSTSTASTTTTTPSTSTHTTTV-TYSTNA 317


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 RMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 246
           R++ D AG++   LL ++N +L     H + LK   DEA
Sbjct: 619 RIYTD-AGRVCRPLLIVENQKLALKKRHIDQLKEAADEA 656


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 RMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 246
           R++ D AG++   LL ++N +L     H + LK   DEA
Sbjct: 420 RIYTD-AGRVCRPLLIVENQKLALKKRHIDQLKEAADEA 457


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   PTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYSENA 137
           PT++  ++    T TS      S+TT    T    TTV TYS NA
Sbjct: 256 PTTTVVTTVPTTTATSTSTSTASTTTTTPSTSTHTTTV-TYSTNA 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,381,392
Number of Sequences: 27780
Number of extensions: 188530
Number of successful extensions: 740
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)