Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 180 NFQKHTSYFPSQIRV 136
           N Q+HT YF  Q+ V
Sbjct: 239 NLQRHTGYFLIQVYV 253


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 268 DEPAVQQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLF 155
           DEP + + L+L   +   H LT ++   Y+  K ++ F
Sbjct: 244 DEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDF 281


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 41  CPWICTAGCGAG 6
           CPWIC     AG
Sbjct: 235 CPWICELTNDAG 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,001
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)