Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329G01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0157 + 14947935-14948210,14948448-14948518,14948891-149490... 133 9e-32
08_02_0703 - 20188489-20190246 32 0.24
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 32 0.24
05_04_0035 + 17378541-17381276 30 0.98
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 28 4.0
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071... 28 4.0
06_02_0201 - 12960493-12960606,12960727-12960853,12961100-129612... 28 5.2
03_02_0088 - 5558079-5558663,5558762-5559388,5559490-5559559,555... 27 6.9
10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714 27 9.1
09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341 27 9.1
01_06_1189 + 35241254-35241928 27 9.1
>03_03_0157 +
14947935-14948210,14948448-14948518,14948891-14949004,
14949160-14949242,14949329-14949390,14949495-14949614,
14950398-14950493,14950613-14950696
Length = 301
Score = 133 bits (321), Expect = 9e-32
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +2
Query: 227 IAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYR 406
+ D+ + K+Y+LC+YNRD DSYRSPWSN YDPPL+DG++PSE +R LE++AN F YR
Sbjct: 93 VCMDKESVKEYILCEYNRDADSYRSPWSNKYDPPLEDGTVPSEEMRNLEVEANDVFSVYR 152
Query: 407 EMYFEGGVSSVYLW-DMDHGFAGVILIKKAGDGSQ 508
+ Y+EGG+SSVY+W D D F LIKK G+G +
Sbjct: 153 DQYYEGGISSVYIWEDEDESFIACFLIKKDGEGKR 187
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 98 MDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKI 229
M+ A+DLMRR+PP + E L L+ L+P DLLS VD PL++
Sbjct: 1 MEAAMDLMRRMPPGRAETALNALLSLIPDHSLDLLSQVDLPLQV 44
>08_02_0703 - 20188489-20190246
Length = 585
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 212 LLMIIGRHTYSERGLSNLLNSFRSAEGAASASSPVH 105
L +++G SER L + +NS R+ G A +S PVH
Sbjct: 522 LRVVLGLGDDSERDLPDFMNSARNVNGIAGSSVPVH 557
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 119 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIA 232
+RR+ Q +++NLT+ ++L P + D +LS LK A
Sbjct: 461 VRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAA 498
>05_04_0035 + 17378541-17381276
Length = 911
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 95 QMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNG 250
+MD AL + R+P ++I+ N T LV ++C + +D+ ++ D + G
Sbjct: 488 RMDDALKVYGRMPDKEIKPNTTTFETLVNALCKE--GDLDKARELVSDMAKG 537
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 173 LVPSMCDDLLSSVDQPLKIAQDR 241
L+P + DDL +SVD+P+++ DR
Sbjct: 153 LLPPIPDDLAASVDRPVRVHLDR 175
>04_04_0754 + 27803143-27803517,27805441-27806832,27806910-27807164,
27807246-27807368,27807643-27808119,27808217-27808603
Length = 1002
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 132 GSLRIKSSAQSICWSLILKFYYS 64
G+ SS +CWSL+L++Y S
Sbjct: 975 GAAMAASSVSVVCWSLLLRYYKS 997
>06_02_0201 -
12960493-12960606,12960727-12960853,12961100-12961276,
12961864-12961975,12964141-12964144
Length = 177
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 107 ALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDY 259
A D++ +L + + + +D+V ++CDD + + + I + R+N +Y
Sbjct: 126 ANDILEQLATRVLHEEHQVYVDVVTALCDDRIVWREDGVPIIRSRTNPDEY 176
>03_02_0088 -
5558079-5558663,5558762-5559388,5559490-5559559,
5559905-5559957
Length = 444
Score = 27.5 bits (58), Expect = 6.9
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Frame = +2
Query: 89 DQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAQDRSNGKDYLLC 268
D + C LDL +R+ Q + L DL L+PS D ++ A R YL
Sbjct: 302 DTTLACRLDLEKRMAAQLGQAVLDDL--LIPSSSPDAAAATTAYDIDAVQRILA-GYLDL 358
Query: 269 DYNRDGD---SYRS--PWSNTYDPPLDD----GSMPSERLRKLEIDANLAFDQY 403
DY D Y + +S+ PP D G + L ++ D NL+ D++
Sbjct: 359 DYTTDPPPRLDYTTDDDFSSAASPPHSDVAQVGRLMDSYLAEIASDENLSVDKF 412
>10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714
Length = 193
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 212 DQPLKIAQDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSER-LRKLEIDANL 388
DQ + A+ + G +CD + G + +S+T P L + +PS++ L LE+D +
Sbjct: 102 DQQM-FARCKIPGASSTICDNGQAGHGTSAGYSSTDSPVLVNCRLPSKKCLTSLEVDRGI 160
>09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341
Length = 353
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 380 HLFLVFSSVQRAWSHHLMVGRKYSTKETYRSHR 282
+L L F+S + A +H+ RK+S K+ RSHR
Sbjct: 129 YLTLTFNSEEEARAHY---NRKFSLKKFLRSHR 158
>01_06_1189 + 35241254-35241928
Length = 224
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 432 LTPPSKYISRY*SKARLASISSFLKRSEGMEPSSNGG 322
+TPP Y+ R+ KA A+ ++ +R +G + GG
Sbjct: 85 ITPPPSYLLRHGGKAGAAAPAAPRRRPQGKGKAKTGG 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,825
Number of Sequences: 37544
Number of extensions: 275531
Number of successful extensions: 742
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -