Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.56
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 0.97
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.0
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 3.9
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 25 5.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 5.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 5.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 6.8
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 9.0
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.0
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 299 MSANNVKPFTVFVEGNIGSGKTTFLE 376
M+ KP + V G GSGKTTF++
Sbjct: 1 MTDKEKKPCAIIVVGMAGSGKTTFMQ 26
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 293 SKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQ 388
SK + ++P V + G++ GKTT L+ FR+
Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTTLLDAFRK 193
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 429 GEILKVAIFWNSCTKIQKNG 488
G ++ I W SC KI+K G
Sbjct: 148 GRLIDTGILWESCEKIEKLG 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 NVKPFTVFVEGNIGSGKTTFLE-HFR-QFEDITLLTEPVEM 427
NV F + + G+ G+GKTTF++ H +FE + T VE+
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 457 QKIATFKISPHFNGLRQQSD 398
+KI+ FK+ P F+ L+ +SD
Sbjct: 294 EKISPFKLEPQFHHLKDKSD 313
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 435 SRHISTGSVNKVISSN 388
S+H+ST S+N+V SSN
Sbjct: 656 SKHLSTSSLNRVNSSN 671
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 287 NISKMSANNVKPFTVFVEGNIGSGKTTFLE 376
N S+ S P T+ V G GSGKTT +E
Sbjct: 17 NRSRESIQFFSPLTLIV-GQNGSGKTTIIE 45
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 329 VFVEGNIGSGKTTFLEHFRQFEDITLLT 412
VFV G GSGKTT + F ++++ LT
Sbjct: 95 VFV-GETGSGKTTQIPQFVLYDELPHLT 121
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 279 TESNF*STSLLNTKLAFCNIF 217
TESN S LLNT+L NIF
Sbjct: 118 TESNIRSKQLLNTQLEQENIF 138
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 317 KPFTVFVEGNIGSGKTTFL 373
+ FT+ V G +GSGKT L
Sbjct: 85 RAFTIGVGGPVGSGKTALL 103
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 141 FITFDRFSLAWH-WLVCLVLTGTFSAGKYCRTQVSCSIN*LIKNCFQLPLTSQK*VPTML 317
F+ D+FS A LV + G + C SI+ L+ C++LP++ +K +P +L
Sbjct: 776 FVYHDQFSRAQEDELVSVFFAGLQKWNEACHV----SIHSLMLCCYELPVSIRKQLPAIL 831
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 478 WIFVHEFQKIATFKISPHFNGLRQQSD 398
W F +++ I+TF PH L +QS+
Sbjct: 61 WEFDYQYSGISTFAHLPHVRCLVEQSE 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,527
Number of Sequences: 5004
Number of extensions: 44541
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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