Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 40 0.001
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 31 0.74
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 30 1.3
04_04_0505 + 25719959-25720052,25721548-25722266 28 5.2
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 9.1
10_08_0331 - 16831646-16834756 27 9.1
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 9.1
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564... 27 9.1
01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510 27 9.1
>01_06_1516 -
37908284-37908497,37909666-37909733,37909809-37910186,
37910315-37910393,37910433-37910749
Length = 351
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Frame = +2
Query: 317 KPFTVFVEGNIGSGKTTFLEHFR----QFED-ITLLTEPVEMWRDL--KGCNLLELMYKD 475
K T VEGNI GKTTFL+ + D + ++ EP+ W+D+ N+L+ Y +
Sbjct: 44 KRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAE 103
Query: 476 PEK 484
P++
Sbjct: 104 PQR 106
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 30.7 bits (66), Expect = 0.74
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 430 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 278
PH G+ QS T Q + YV +HGEWF G+ D+ GN
Sbjct: 108 PHVAGIAGQS-----THGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGN 153
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 430 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 278
PH G+ QS T Q + Y+ +HGEWF G+ D+ GN
Sbjct: 297 PHIAGIAGQS-----THGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGN 342
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 245 TRNLRSAIFSRRKCSS*NKANKPMPSQREP 156
+R L+ A+FS R+ + ++P P+QR P
Sbjct: 27 SRGLQGALFSSRRVVGDGRISQPAPNQRAP 56
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 189 LVLTGTFSAGKYCRTQVSCSIN*LIKNCFQLPL 287
L LT TF A K C +Q+ I+ ++ C LPL
Sbjct: 344 LFLTRTFGAEKKCPSQLEGIISDILYKCDGLPL 376
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 483 FSGSLYMSSKRLQPLRSRHISTGSVNKVISSN*RKCSRNVVLPL 352
FSG L S PL+S H++ S + V + R C V L +
Sbjct: 689 FSGELPASRSPELPLQSLHLANNSFSVVFPATIRNCRALVTLDM 732
>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 422 EMWRDLKGCNLLELMYKDPEK 484
E+WR L+GC L +++ P+K
Sbjct: 1431 EIWRALEGCQLKDVVASKPQK 1451
>03_06_0707 -
35655084-35655215,35656088-35656229,35656358-35656485,
35656852-35656944,35657183-35657252,35657324-35657445,
35658143-35658265,35659453-35659710,35659995-35660074,
35660244-35660389,35660773-35660906,35661001-35661137,
35663013-35663135,35663521-35663590,35663925-35664050,
35664166-35664393
Length = 703
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 314 VKPFTVFVEGNIGSGKTTFLEHF 382
+ P +++ GN+GSGKT ++ F
Sbjct: 308 IAPKGIYLYGNVGSGKTMLMDMF 330
>01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510
Length = 79
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 284 SNISKMSANNVKPFTVFVEGNIGSGKT 364
+N M ++ VKP F++ +IG G T
Sbjct: 27 NNFDNMKSSKVKPLEAFMKSSIGKGLT 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,820
Number of Sequences: 37544
Number of extensions: 259118
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -