Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical ... 30 1.2
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 2.7
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 2.7
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 2.7
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 2.7
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 2.7
AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm rece... 28 3.5
AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical ... 28 4.7
U21320-4|AAM54175.1| 188|Caenorhabditis elegans Hypothetical pr... 27 6.2
U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 27 6.2
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 27 6.2
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 27 6.2
U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical p... 27 8.1
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 27 8.1
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 27 8.1
>AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical
protein C17B7.8 protein.
Length = 558
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKW 487
G K + L H FE I ++ L GC L + M+ +PEK+
Sbjct: 447 GKPKNSILPHHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKF 493
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 382
++ S +S P+T+FV GN G F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 382
++ S +S P+T+FV GN G F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 382
++ S +S P+T+FV GN G F EHF
Sbjct: 361 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 396
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 382
++ S +S P+T+FV GN G F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 382
++ S +S P+T+FV GN G F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361
>AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm
receptor protein 143 protein.
Length = 336
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 76 FCYS*SMFRYPFIRMLCSKGLNLSHLTGSLWLGIG-LFALF*LEHFRRENIAERK 237
+C S+ +PF+ + K N + ++ + L A+F ++ FRRE + +RK
Sbjct: 264 YCPVGSLISFPFLEIEVGKFGNYTGAAAGIYPALEPLIAIFCIKDFRREVLCQRK 318
>AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical
protein C29G2.6 protein.
Length = 202
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 159 FSLAWHWLVCLVLTGTFSAGKYCRTQVSCSIN*LIKNCFQLPLTSQ 296
F LA+ L G + K CR + CSI K C LP+ S+
Sbjct: 5 FLLAFSILAVSTTLGVSNLNKQCRDLLQCSIQ---KKCVNLPVLSK 47
>U21320-4|AAM54175.1| 188|Caenorhabditis elegans Hypothetical
protein K04G7.4b protein.
Length = 188
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 329 VFVEGNIGSGKTT 367
+ VEGNIGSGKTT
Sbjct: 75 IVVEGNIGSGKTT 87
>U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical
protein K04G7.4a protein.
Length = 436
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 329 VFVEGNIGSGKTT 367
+ VEGNIGSGKTT
Sbjct: 75 IVVEGNIGSGKTT 87
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 69 Y*ILLQLKHVQISVYSDALFKRIEFITFDRFSLAW-HWLVCLVLTG 203
Y +L+ L + +S+ ALF + ITF S+ + W+V ++ G
Sbjct: 92 YCVLVSLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSVIFNG 137
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 69 Y*ILLQLKHVQISVYSDALFKRIEFITFDRFSLAW-HWLVCLVLTG 203
Y +L+ L + +S+ ALF + ITF S+ + W+V ++ G
Sbjct: 195 YCVLVSLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSVIFNG 240
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 69 Y*ILLQLKHVQISVYSDALFKRIEFITFDRFSLAW-HWLVCLVLTG 203
Y +L+ L + +S+ ALF + ITF S+ + W+V ++ G
Sbjct: 208 YCVLVSLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSVIFNG 253
>U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical
protein T28A11.17 protein.
Length = 493
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKW 487
G K + L + FE I ++ L GC L + M+ +PEK+
Sbjct: 405 GKPKNSILPNHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKF 451
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 311 NVKPFTVFVEGNIGSGKTTFLEHFRQF 391
N KP ++ V G GSGKTTF++ F
Sbjct: 28 NQKP-SILVLGMAGSGKTTFVQRLTAF 53
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 311 NVKPFTVFVEGNIGSGKTTFLEHFRQF 391
N KP ++ V G GSGKTTF++ F
Sbjct: 28 NQKP-SILVLGMAGSGKTTFVQRLTAF 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,592
Number of Sequences: 27780
Number of extensions: 251600
Number of successful extensions: 643
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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