Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 30 0.18
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.32
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 1.3
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 5.2
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 5.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 5.2
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 5.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.0
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 9.0
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 360 TVTLSPVFGNQMSTLWLKSEPVNWYPF-LAVEDGFANSQPT 241
T TL V G M T K EP YP+ LA DGF Q T
Sbjct: 453 TCTLIEVEGEVMRTSIKKGEPKILYPYQLAFRDGFCQEQIT 493
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +2
Query: 275 AKNGYQLTGSLFNHSVDIWFPKTGDRVTVNQEYLGHDVFDQITLDADVRGSVPVILSGIK 454
+ N +L SL D WF K GD Q + GH + L+ D + P ++
Sbjct: 412 SSNKLKLVPSLARKEWDSWFKKMGDWCISRQIWWGHQIPVWKILEEDKWIAAPNYEKALQ 471
Query: 455 LDIG 466
L +G
Sbjct: 472 LSVG 475
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -3
Query: 519 ESERISPGSTMVYCSSKSPMSSLIPDKITGTEPRTSASKVIWSKTS*PKYSWFTVTLSPV 340
+++ S + V S+ S +S++IP I P SAS+ + TS + + S
Sbjct: 198 DTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTT 257
Query: 339 FGNQMSTLWLKS 304
G+ S+ W +S
Sbjct: 258 SGSSGSSDWGRS 269
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 378 PKYSWFTVTLSPVFGNQMSTLWLKSEPVNW 289
P+Y+W TL+ + G MS +L + V W
Sbjct: 164 PEYAWLFATLTGIAGTSMS--FLVNPTVGW 191
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 344 GDRVTVNQEYLGHDVFDQITLDADVRGSVPVILSGIKLDI 463
G R+ + EYL + FD++ A G V SGIK +I
Sbjct: 125 GRRIVTSFEYLVAEYFDKVEKKAKSEGKVD---SGIKTEI 161
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 264 GFANSQPTTLPMMFNNCKLLP 202
G PT P + N CK+LP
Sbjct: 445 GMTTMPPTPYPALINPCKILP 465
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +2
Query: 269 STAKNGYQLTGSLFNHSVDIWFPKTGDRVTVNQEYLGHDVFDQITLDADVRGSVPVILSG 448
STA GY G H +W +T + ++ + L D IT D + +
Sbjct: 39 STALQGYINEGLYNPHPKPMWKERTEETRSLLAKLLNASTKDSITFTRDTTEGLNLFQRS 98
Query: 449 IKLDIGD 469
+K GD
Sbjct: 99 LKWKPGD 105
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 347 DRVTVNQEYLGHDVFD-QITL 406
DRV + QEYL HD D +TL
Sbjct: 12 DRVRIFQEYLEHDTDDANVTL 32
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -2
Query: 364 VYGNP-VTGFREPNVNAVVEKRAR*LVSVFGRGRWLRKQPANYAAHDV*QLQTASEDWWR 188
V G P TG R +V V + G + K P++ + Q+ S D WR
Sbjct: 92 VSGAPKTTGARSDSVKRPVPMLQKKAPITSGESN-INKSPSSSEDAAIQQMFQVSSDQWR 150
Query: 187 ERQCRVSSPVSDY 149
E Q +++S Y
Sbjct: 151 ETQDKMASATPIY 163
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 429 TEPRTSASKVIWSKTS*PK-YSWFTVTLSPVFGNQMSTLWLKSEPVNWYPFLAVEDGFAN 253
T+ T S ++ T Y T+T S + S ++ S P++ F DGF
Sbjct: 347 TKTITDTSSIVTYSTGVETLYETETITSSEI----SSIIYNFSTPISGSSF---PDGFKP 399
Query: 252 SQPTTLPMMFNNCKLLPRT 196
PT+ P + ++ K +P T
Sbjct: 400 INPTSFPSLTSSTKKIPST 418
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 206 FRGLVA*ETVPCKLSRQRLRRKTGYP 129
F ++ +T+PCK + +++ K+G P
Sbjct: 442 FTDILTQKTIPCKDHKLKIKSKSGLP 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,844
Number of Sequences: 5004
Number of extensions: 49560
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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