Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1096 + 34089572-34089880,34090405-34090470,34090723-340909... 29 2.3
04_03_0624 - 18115559-18115725,18115993-18116872 29 3.0
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 28 4.0
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 28 5.2
02_01_0155 - 1080923-1081024,1081111-1081176,1081306-1081370,108... 28 5.2
01_07_0220 + 42087390-42087645,42087883-42087989 28 5.2
05_07_0052 + 27340499-27340597,27340708-27340801,27341206-273414... 27 9.1
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 9.1
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239... 27 9.1
02_05_0708 - 31103246-31103359,31104146-31104178,31104297-311043... 27 9.1
>02_05_1096 +
34089572-34089880,34090405-34090470,34090723-34090903,
34091164-34091360,34091484-34091534,34091609-34091700,
34092234-34092246,34092278-34092349,34092970-34093048,
34093092-34093174,34093568-34093711
Length = 428
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 29 GFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDIQSYVVVA 157
GF G+GK+ + N + HGK V+ + + +VDI +V A
Sbjct: 97 GFLGSGKTTLLNHILTAHHGKRIAVIENEY-GEVDIDGSLVAA 138
>04_03_0624 - 18115559-18115725,18115993-18116872
Length = 348
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 5 GICCQCSEGFYGNGKSCIKNDVPLRVHGKLN 97
G C CS+GFYGN +K+D P G N
Sbjct: 269 GYICNCSKGFYGN--PYLKSDDPDSCQGYNN 297
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 198 SSEAVCSC*TSWAA*LAGCLRSHLPRPKTDTN*RARFSTTALT 326
SS + C AA AGC R+H + + ARF TT +T
Sbjct: 25 SSSSFLPCLLLAAALSAGCCRAHAATARAPRSLLARFPTTKMT 67
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 428 VPVILSGIKLDIGDFEEQYTIVEPGLI 508
VP+IL G KLD+ D ++Q+ + PG +
Sbjct: 126 VPIILVGTKLDLRD-DKQFFVDHPGAV 151
>02_01_0155 -
1080923-1081024,1081111-1081176,1081306-1081370,
1081938-1082001,1082359-1082507,1082591-1082678,
1083757-1083855
Length = 210
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 428 VPVILSGIKLDIGDFEEQYTIVEPGLI 508
VP+IL G KLD+ D ++Q+ + PG +
Sbjct: 124 VPIILVGTKLDLRD-DKQFFVDHPGAV 149
>01_07_0220 + 42087390-42087645,42087883-42087989
Length = 120
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +2
Query: 221 LNIMGSVVGWLFAKPSS---TAKNGYQLTG--SLFNHSVDIWFPKTGDR 352
+NI+ +++ + A P++ TA +G +LTG +L SVD+W P G R
Sbjct: 50 INIIRTLLS-ILASPAAVDWTASSGRRLTGCSTLRCSSVDLWVPSLGRR 97
>05_07_0052 +
27340499-27340597,27340708-27340801,27341206-27341415,
27341727-27342439
Length = 371
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 218 LLNIMGSVVG---WLFAKPSSTAKNGYQLTGSLFNHSVDIWFPKTGDRVTVNQEYLG 379
LL GS VG L S+AKN + SLFN +V + ++ DR T + G
Sbjct: 94 LLGCHGSTVGAGPTLHKSICSSAKNVVDSSFSLFNQAVSAYESRSPDRKTTIPQVTG 150
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 250 AVCEAIFHGQKRIPINGLAF 309
A+C A FHG RI I ++F
Sbjct: 227 AICNACFHGSSRIMIAAISF 246
>03_06_0408 -
33722741-33722893,33723174-33723350,33723798-33723947,
33724085-33724145,33724338-33724558
Length = 253
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 416 VRGSVPVILSGIKLDIGDFEEQ 481
++ VPVIL+G K+D+ D ++Q
Sbjct: 93 LQSKVPVILAGCKVDLSDKQQQ 114
>02_05_0708 -
31103246-31103359,31104146-31104178,31104297-31104362,
31104532-31104596,31105456-31105519,31105629-31105738,
31105886-31105973,31106328-31106432
Length = 214
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 428 VPVILSGIKLDIGDFEEQYTIVEPGLI 508
VP++L G KLD+ + ++ Y + PG+I
Sbjct: 113 VPIVLVGTKLDLRE-DKHYLLDHPGMI 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,224
Number of Sequences: 37544
Number of extensions: 330533
Number of successful extensions: 942
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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