Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...   129   1e-30
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   2.0  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   2.0  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   2.0  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of s...    28   3.5  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    28   3.5  
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   8.1  

>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score =  129 bits (312), Expect = 1e-30
 Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 1/171 (0%)
 Frame = +2

Query: 5   GICCQCSEGFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDIQSYVVVADGRAYTALS 184
           G CC C  GFYGNGK C+    P R+ G   GV+N + ++  ++ ++    DG  +TA+S
Sbjct: 380 GFCCNCDTGFYGNGKECLPKGEPQRISGSFEGVINRIPIDKTELHTFATSTDGNVHTAVS 439

Query: 185 LTPPVLGSSLQLLNIMGSVVGWLFAK-PSSTAKNGYQLTGSLFNHSVDIWFPKTGDRVTV 361
             P  LG  L+ L  +G V+GWLFA   S    NG+QLTG LFN +V +   +    VT+
Sbjct: 440 KIPSDLGHPLRFLYSIGGVMGWLFADVQSPNVYNGFQLTGGLFNRTVALHI-EQNYYVTI 498

Query: 362 NQEYLGHDVFDQITLDADVRGSVPVILSGIKLDIGDFEEQYTIVEPGLIRS 514
            QE+ G ++ D       V G++P I  G ++   D+EE+Y     G + S
Sbjct: 499 KQEFSGRNIHDYFKSHLFVSGTLPDIAPGSEVIFPDYEEEYVRERRGYLTS 549



 Score = 30.3 bits (65), Expect = 0.87
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCIK 61
           CQC +G+ G+G+SCI+
Sbjct: 734 CQCLQGYQGDGRSCIR 749



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 14   CQCSEGFYGNGKSCI 58
            C+C +GF G+G SC+
Sbjct: 1135 CKCVDGFKGDGTSCV 1149


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 14   CQCSEGFYGNGKSC 55
            CQCS GF GNG SC
Sbjct: 2203 CQCSSGFSGNGVSC 2216



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 5   GICCQCSEGFYGNGKSC 55
           G  C+C EGF G+GK+C
Sbjct: 275 GYECECEEGFEGDGKNC 291



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 5    GICCQCSEGFYGNGKSCI 58
            G  C+C+ G++GNG  C+
Sbjct: 2160 GTTCKCNPGYFGNGLCCV 2177



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 5    GIC-CQCSEGFYGNGKSCIK 61
            G C C+C  G+ G+G +CIK
Sbjct: 1782 GSCGCKCMAGYTGDGATCIK 1801


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 489 MVYCSSKSPMSSLIPDKITGTEPRTSASKVI 397
           +VY SS++  SS IP K TG +P   A +V+
Sbjct: 157 VVYVSSEAVDSSEIPSKRTGMDPSVQAGEVL 187


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDI 136
           C+C  GF+GN    + +  P      LNG    +  ND D+
Sbjct: 575 CKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQIKYNDDDV 615


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDI 136
           C+C  GF+GN    + +  P      LNG    +  ND D+
Sbjct: 575 CKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQIKYNDDDV 615


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDI 136
           C+C  GF+GN    + +  P      LNG    +  ND D+
Sbjct: 575 CKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQIKYNDDDV 615


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSC 55
           C+C +GF G+GK+C
Sbjct: 554 CECRDGFVGDGKTC 567


>U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform b
           protein.
          Length = 86

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCI-KNDVP 73
           CQCS+GF  +G  CI K D P
Sbjct: 65  CQCSKGFVRHGLRCIDKKDCP 85


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCI-KNDVP 73
           CQCS+GF  +G  CI K D P
Sbjct: 114 CQCSKGFVRHGLRCIDKKDCP 134


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -1

Query: 257 QTASQLRCP*CLTTANCFRGLVA*ETVPCKLSRQRLRRKTGYPHHLGARHSELHSVF 87
           Q    L  P   T     R L+  + V CK  + R   K  Y  HL  +H +L+  +
Sbjct: 192 QDGIDLPPPNAPTDVRIVRKLIRQKMVRCKKCKNRFIEKNIYERHLRDKHPDLYEEY 248


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 14  CQCSEGFYGNGKSCIKNDVP 73
           C C++GF   G+SC+    P
Sbjct: 799 CMCAQGFRSEGRSCVSECKP 818


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,972
Number of Sequences: 27780
Number of extensions: 279202
Number of successful extensions: 878
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)