Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.42 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   6.8  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   9.0  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 298 TICLCNVKEMQT*IISTEKMLLLKK*YTNHILRVNNTKINITFK*LVKIFI 146
           T+CL  +KE  +  I+ ++   L+  Y N+ +R  + +  I FK L K ++
Sbjct: 267 TLCLLFMKECYSRTITEQEAARLRVEYNNNFIRAKSEEEYIDFKALAKRYL 317


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 512 LYIRTAIFTLPIDIFLSCVYY 450
           L+I TA+F++ +  F+ CV+Y
Sbjct: 672 LFISTALFSIIMIYFVFCVFY 692


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 406 LVFKMQDILDTIFEQSKFYNE*ILFFNLQFWGTMCLTICL 287
           L F+M  I   I ++ KF     L  N+ FW ++ + I L
Sbjct: 425 LFFQMTQIPYIIIQRQKFVRRHRLLGNIAFWFSIIIGIAL 464


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 SYLNVMFIFV-LFTLKMWLVYYFFNKSIFSVLII 260
           S L ++FI + +  L  ++VY +F++  FSV+++
Sbjct: 549 SLLKILFISLCILCLLQFIVYSYFHREGFSVILM 582


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 482 PIDIFLSCVYYKVEYAT 432
           P+ IF+SC  Y V Y T
Sbjct: 623 PVSIFISCAGYVVNYFT 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,623
Number of Sequences: 5004
Number of extensions: 38041
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)