Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289...    29   3.0  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     28   4.0  
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013...    27   6.9  

>02_04_0370 -
           22427559-22427590,22427783-22427964,22428754-22428939,
           22429125-22429280,22429366-22429589,22430933-22430968,
           22431390-22431539
          Length = 321

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 213 LVYYFFNKSIFSVLII*VCISFTLHRHIVRHIVPQN 320
           + YY FN  +FS+L++ +     ++R +VR I  +N
Sbjct: 269 IYYYVFNSLLFSLLVLHIYWWVLIYRMLVRQIKTRN 304


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 488 TLPIDIFLSCVYYKVEYATTVLLDYKVVSIQNARHFRY 375
           +LP D+F    Y +V   T   L+    S++N +H RY
Sbjct: 577 SLPNDVFKKSKYIRVLDLTGCCLERLPTSVKNLKHLRY 614


>10_08_0392 +
           17500748-17500877,17501006-17501280,17501321-17501388,
           17501516-17501632,17501802-17501943,17502622-17502912,
           17503507-17503650
          Length = 388

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 490 LPYQ*IFFYHVYTIKLNMPLLCF*IIKLLVFKMQDILDTIFEQSKF 353
           L +  + FY   TI    P  C  + KL +     +L+TIF   KF
Sbjct: 112 LGFNSVGFYQASTIHFADPNHCILMTKLAIIPFTMLLETIFLSKKF 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,072
Number of Sequences: 37544
Number of extensions: 175449
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)