Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    29   2.0  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 132 NHCK*INI-FTSYLNV-MFIFVLFTLKMWLVYYFFNKSIFSVLII*VCISFTLHRHIVRH 305
           N C   NI F +Y +V MF  V+F  K +L Y+  + S FS+        F++  +++ H
Sbjct: 361 NICSAANIPFLAYYSVEMFNIVIFIPKTFLSYFLVSFSTFSISSSSSTHRFSICTYVLSH 420

Query: 306 IV 311
           I+
Sbjct: 421 IL 422


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 102 IQRATLLSVTNHCK*INIFTSYLNVMFIFVLFT----LKMWLVYYFFNKSIFS 248
           I RA LL + N C  +  F S++ +MF+ V FT    L  + + YF+N   FS
Sbjct: 7   IPRALLLGLKNLCFFVFPFVSFIILMFL-VFFTGKKCLSAFKLIYFYNFLYFS 58


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +3

Query: 168 LNVMFIFVLFTLKMWLV----YYFFNKSIFSVLI 257
           +N++ +F++ T K  L+    YY FN ++F +++
Sbjct: 26  INILLLFIMKTTKSSLLKDMQYYLFNTALFEIIV 59


>Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical
           protein C53A5.8 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 90  HRT*IQRATLLSVTNHCK---*INIFTSYLNVMFIFVLFTLKMWLVYYFFNK 236
           HR  ++  TL+ ++NH      +NI+  Y +V FI +L  + +  ++Y   K
Sbjct: 163 HRIEMENGTLIEISNHSMTTWTLNIYAIYSSVYFI-ILLLVGIISIFYISRK 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,104
Number of Sequences: 27780
Number of extensions: 209369
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)