Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   4.7  
CU457740-7|CAM36337.1|  363|Caenorhabditis elegans Hypothetical ...    28   4.7  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    28   4.7  

>AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical
           protein Y66D12A.10 protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 474 TLHSFVRN*SRCCDDKISIIFATTHKISFGHSEYFLFTLKLISVNFSVSITII 316
           T HS+ R   +CCDD++ ++      IS  H          + V  SV++ +I
Sbjct: 93  TGHSYARIFGKCCDDRLRMVHVQDAYISAHHQLVNFVRFCELVVPLSVNLLVI 145


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 441 CCDDKIS--IIFATTHKISFGHSEYFLFTLKLI 349
           CC D +   +IF+ T  ++F H  +FL  +K I
Sbjct: 226 CCFDNVVSLLIFSVTSSVTFTHDAFFLTMVKSI 258


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 441 CCDDKIS--IIFATTHKISFGHSEYFLFTLKLI 349
           CC D +   +IF+ T  ++F H  +FL  +K I
Sbjct: 226 CCFDNVVSLLIFSVTSSVTFTHDAFFLTMVKSI 258


>CU457740-7|CAM36337.1|  363|Caenorhabditis elegans Hypothetical
           protein C50E10.7 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 420 IIFATTHKISFGHSEYFLFTLKLISVNFSVSITIIF*RQY 301
           IIF TT+ I F   ++    + L+ +N S  I     RQY
Sbjct: 175 IIFTTTYLIFFNKLQFIPIIIFLVVINTSAMIGFFLNRQY 214


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 486 NSIITLHSFVRN*SRCCDDKISIIFATTH-KISFGHSEYFLFTLKLI 349
           N +  +H  +   +  C +   +I A  H K+ F H   F  TLKL+
Sbjct: 107 NHLDKIHQIIWTFTNNCSEPAYVIDALNHFKVHFNHKATFHLTLKLL 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,759
Number of Sequences: 27780
Number of extensions: 149702
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)