Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    27   1.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   5.2  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   6.8  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    25   6.8  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 145 IQEKYKQLISVFFFIIMPNKS 83
           IQE+   LIS FFF I PN+S
Sbjct: 160 IQEENDSLISPFFFRISPNES 180


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 344 RSAFNTKFIFVCCVQKINR*YKIICTLRICLLHF 445
           R   N + +   CV+K      I C+LR+CLL F
Sbjct: 492 RKTDNVESVLNACVEKYTL-SSITCSLRLCLLEF 524


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 105  LLSCQISHCAVAAFCK*KKRFLLRRSDGP 19
            ++  Q SH ++ AFC  +K F++   + P
Sbjct: 990  IIPTQFSHSSLLAFCHEQKEFVIGNEEKP 1018


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 169 FWRVKIFKQLNISLLFVVLV 228
           +W V++F+ LNI  L V+LV
Sbjct: 137 YWPVELFETLNIGDLSVILV 156


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 21  VRHSYAIKNVFFTYKTLLQHSDLFGMIIKKKTEINCLY 134
           + H Y I N     +  +   D   +++  +  INCLY
Sbjct: 205 ILHEYRIHNADILIREDITVDDFIDLVMGNRRYINCLY 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,435
Number of Sequences: 5004
Number of extensions: 43288
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)