Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81508-4|CAB04139.1| 371|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF026215-9|AAB71318.2| 319|Caenorhabditis elegans Hypothetical ... 29 2.7
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 27 6.2
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 6.2
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 27 6.2
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 27 8.1
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 27 8.1
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL023816-1|CAA19430.2| 250|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024089-3|ABC48260.1| 123|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z81508-4|CAB04139.1| 371|Caenorhabditis elegans Hypothetical
protein F20E11.6 protein.
Length = 371
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 344 LFVTCYFCFNEFINVIVSFTIFEFERNAIFFRLHF*SNPTKTTNNKLIFSCLKIFT 177
+F FCFN + +++F++ RN + F N T L+F K+F+
Sbjct: 295 IFFQALFCFNSASHCLINFSMSTNYRNTVKMAFGFQKNDVLTVRVWLLFQLRKLFS 350
>AF026215-9|AAB71318.2| 319|Caenorhabditis elegans Hypothetical
protein F09G2.2 protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 12 ETWVRHSYAIKNVFFTYKTLLQHSDL 89
E WV S+ KN F TY LLQ S +
Sbjct: 162 EKWVAGSFVEKNGFMTYNELLQLSSM 187
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 458 LSKSVKIFFFVCCPPLYYNI 517
L+ IFF+ CCP YY++
Sbjct: 200 LTSQRSIFFYECCPEPYYDV 219
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 356 NTKFIFVCCVQKINR*YKIICTLRICLLHFIPFHLSKSVKIFFFVCC-PPLYYNI 517
N F+F+ + I+ + + TL +C L FH + V F FVCC YY +
Sbjct: 47 NNSFLFIFTILGISDIFYFVVTL-LCEL----FHYTNWVPDFAFVCCVVASYYGV 96
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 458 LSKSVKIFFFVCCPPLYYNI 517
L+ IFF+ CCP YY++
Sbjct: 200 LTSQRSIFFYECCPEPYYDV 219
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 282 NCKANDYINKL--IKTKVTRNKQ---DLHLIQNSSLCV 380
N +N+Y+++L IK K ++K D+ L QN+ LC+
Sbjct: 272 NIDSNNYLSRLDLIKLKTIKSKNSNSDISLFQNTKLCL 309
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 282 NCKANDYINKL--IKTKVTRNKQ---DLHLIQNSSLCV 380
N +N+Y+++L IK K ++K D+ L QN+ LC+
Sbjct: 272 NIDSNNYLSRLDLIKLKTIKSKNSNSDISLFQNTKLCL 309
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical protein
F22E10.1 protein.
Length = 1318
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 172 WRVKIFKQLNISLLFVVLVGFD*KCNRKNIAFLSNSKIVKLTITLINSLK 321
WR+ I + I L +++ K R+N+ + + K+ I +I S+K
Sbjct: 900 WRIAIAGTIMIVLFATMMISMAYKIARENLKQIRKDEAGKIAIEIIESVK 949
>AL023816-1|CAA19430.2| 250|Caenorhabditis elegans Hypothetical
protein T05G11.2 protein.
Length = 250
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Frame = -1
Query: 311 FINVIVSFTIFEFER-----NAIFFRLHF*SNPTKTTNNKLIFSCLKIFTLQNSLIL*N- 150
FIN + F+IF F+R N I F + T ++ ++ + + I TL +L + N
Sbjct: 21 FINYFILFSIFYFKRIPVNPNMILIYSRFGIDVIYTYSSFMVVTYILIMTLSTNLRIKNL 80
Query: 149 -----WNTGKIQTVNFSLFF 105
W T I+T+ L F
Sbjct: 81 IFLFVWTTTSIKTMRSILAF 100
>AC024089-3|ABC48260.1| 123|Caenorhabditis elegans Hypothetical
protein C36E6.8 protein.
Length = 123
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 416 CTLRICLLHFIPFHLSKSVKIFFFVCCPPLYYNIL 520
CT++ CL+ P ++ + F F+ C L Y +L
Sbjct: 80 CTVQGCLVGLGPGEIAPFITAFVFIICAVLIYILL 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,635
Number of Sequences: 27780
Number of extensions: 242999
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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