Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin rece...    28   3.5  
AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    28   4.7  
Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin
           receptor-like proteinSEB-3 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 438 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 301
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


>AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical
           protein C18B12.2 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 438 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 301
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 295 PDLSQNSNFEHNFAIAAKMYKTV 227
           PD+S++ N+E  F+I  KM++ +
Sbjct: 271 PDVSKSDNYEVEFSIGGKMFRII 293


>Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical
           protein F32G8.2 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 319 PRGDFVAPPDLSQNSNFEHNFAIAAKMYKTVLCFEKFFTTFF 194
           P  DF+ P +++     E  F    KMYK V  FE    T F
Sbjct: 450 PVPDFINPVNINFMQKLEKEFGKEIKMYKCVQSFEMGNQTAF 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,635,952
Number of Sequences: 27780
Number of extensions: 232416
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)