Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.56
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.73
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.97
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.2
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 3.0
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 26 3.0
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.9
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 3.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 3.9
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 3.9
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 5.2
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 5.2
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 6.8
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 6.8
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 6.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 9.0
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 9.0
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.0
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 143 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQ 259
F + + Y L L+N N+TW ++VLLWL Q
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQ 141
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = +2
Query: 113 YFSIFHFW-FYF-NITLNYFFRLC 178
YFS+F F+ F F ++ N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.9 bits (59), Expect = 0.97
Identities = 23/98 (23%), Positives = 41/98 (41%)
Frame = +2
Query: 107 NTYFSIFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSL 286
+++ S FW YF L+ + + V + S S +LK + ++ L F L +
Sbjct: 99 SSFSSTSKFWRYFAYLLSLQI-VIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIRI 157
Query: 287 YYCHTSEYRSCDHSD*PNFCSFLYIYQFTCFRFF*LSC 400
+C T R S F + L+ ++ T R + C
Sbjct: 158 CHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVYSQIC 195
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 202 DKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 59
DK + KKV Q+N E+E K D K+S ++P + +++ KD
Sbjct: 21 DKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK-QLAQSNDKD 66
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 514 KDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQ-LKEP 380
K ALA I +S +Y+V A+ +T K+ D+ G LK+P
Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 229 QTPCLALVASIYFSPLELPVLLPYQRVQELRSQRL 333
QTPCL V + +P + + R+Q L QRL
Sbjct: 241 QTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3
Query: 225 NQVELCPLIKRLLTRLQS 172
N+V+LCPL++ +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +2
Query: 134 WFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYY 292
WF++ +T+ +FF+ S +S L W H+F L+ + +
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFLLFFLAEVAF 322
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 345 AAFFISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGS 488
++ F+S + S P +SP T++ + LAASTL I SGS
Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 175 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 68
EP+K ++ + K + V+V+++P+ P +DP
Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 225 NQVELCPLIKRLLTRL 178
NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/70 (24%), Positives = 25/70 (35%)
Frame = +2
Query: 122 IFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYYCHT 301
+FH YF TL +C +S +S FLK L + ++ H
Sbjct: 89 VFHIG-YFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHC 147
Query: 302 SEYRSCDHSD 331
+ R C D
Sbjct: 148 KKMRRCSKCD 157
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 208 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKK 62
++ K D+ + P + Q+ +EV + KD+K + ++ E PKK
Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKK 321
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 143 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSL 286
+N+TL FR+ +V S F+ WF+ V+L + T L SL
Sbjct: 729 WNMTLANGFRMTGIVGSIFVVILFGFWFIATCVVLVAMEGTSAMLHSL 776
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = -2
Query: 208 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 59
+A K V+ + P + P+V S+ +P +I E+P +D
Sbjct: 273 TAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSED 322
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = -2
Query: 199 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVK 104
K +DKV EP+ + +R ++++ ++ D V+++
Sbjct: 45 KCQLDKVAEPQGLSKRIMDLQGRIYDLNVTME 76
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 241 DKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKD 101
+ V E+P + A + DK +P I++N+E E + KD
Sbjct: 101 ESVAEKPEKEDLAVIESEDKAAKPDGEIKKNVETEVTSRSTSSQEKD 147
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 202 DKATVDKVTEPKKVIQRNIEVEPKVK 125
+K + T PK+V++ N+ V+ KVK
Sbjct: 242 EKKSKSTKTYPKQVLEGNVTVQDKVK 267
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 184 CQQSLYQRTQFYLVPQTPCLALVASIYFSPLELPVLLPYQR 306
C +S + R + + C + + +PL+ PVL+ + R
Sbjct: 987 CTKSSHYRKKLWDFYNFSCTITILMLLLAPLDFPVLIVWAR 1027
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 205 RTQFYLVPQTPCLALVASIYFSPLELPVLLPYQRVQELR 321
R QF+L+ L LV +F P L Y+R + LR
Sbjct: 240 RWQFWLLMMISALVLVIITFFMPETSEWHLLYKRAKRLR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,002
Number of Sequences: 5004
Number of extensions: 31197
Number of successful extensions: 152
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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