Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329F04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0229 - 19018521-19018927,19019132-19019795 29 2.3
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 4.0
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 28 4.0
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 5.2
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 5.2
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 5.2
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 27 6.9
01_07_0141 - 41390483-41391448 27 6.9
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 27 9.1
04_04_1497 - 33996990-33997178,33997915-33998127,33998320-339985... 27 9.1
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 199 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 74
+A+V ++ EP +E EP+V + VS +++P +PS+ E
Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 247 KQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 68
++D ++P + + + EP++ QR+ + EPK + ++VS D P R E P
Sbjct: 279 REDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDDEPRRRR-QEMP 337
Query: 67 KKD 59
K D
Sbjct: 338 KHD 340
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 374 CFRFF*LSCFDVNKPYFYSFL*SNWFSSLYIVYYR 478
C + L + PYF FL N+F S YI++ R
Sbjct: 95 CLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRR 129
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 TATSPIFAAFFISTNLPVLGS-FNCPVLMSISPIFT 428
+A+SPIF STN P GS P + SP+F+
Sbjct: 874 SASSPIFCNRLTSTNAPPFGSPATSPFSSTSSPVFS 909
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 397 GQLKEPKTGKLVDIKKAAKIGLVAVIAA 314
G +++PK G L D+ KA K+ A+IAA
Sbjct: 331 GMVRQPKWGHLRDVHKAIKLCEPALIAA 358
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 164 FFRLCNLVNSRFISG-HNSTWFLKHLVLLWLHQFTFHR--LSSLYYCHTSEYRSC 319
F + C + N + + +N + + L + L FT +S++ Y H EY+SC
Sbjct: 131 FLQECVINNGTYTNNEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSC 185
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 116 FSIFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWF 226
F + F+ F ++L+YF + N + SRF+SG +T F
Sbjct: 72 FPGYSFFLVF-LSLHYFVHIQNYLFSRFLSGAMATRF 107
>01_07_0141 - 41390483-41391448
Length = 321
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 354 FISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGSII 494
F+S +P L + P+L ++ P F S G+ S T SG+++
Sbjct: 160 FMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVV 206
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 470 IQCRGC*TSYFTRSCKNRAY 411
+QC+ C YF SC N+ Y
Sbjct: 449 VQCKNCDNRYFCNSCINKWY 468
>04_04_1497 -
33996990-33997178,33997915-33998127,33998320-33998553,
33998622-33998818,33999327-33999491,33999758-33999857,
34000213-34000428
Length = 437
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = -2
Query: 475 VIYNVEAAKPVTLQEAVKIGLIDIKTGQLKEPKT----GKLVDIKKAAKIGLVAVIAAPX 308
V+YN+ K +TLQE K+ I L +P G +VD + +I V +IA
Sbjct: 284 VVYNITGGKDITLQEVNKVSQI---VTSLADPSANIIFGAVVDDRYTGEIH-VTIIATGF 339
Query: 307 XXXXXXXXXXXXVKSKLMQPKQDKVFEEPSRIVSADKATVDKV-TEPKKVIQR 152
+++M+ K+ + +A A ++ T K ++R
Sbjct: 340 PQSFQKSLLADPKGARIMEAKEKAANLTYKAVAAATNALPEQYKTSAKAAVER 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,537
Number of Sequences: 37544
Number of extensions: 172149
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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