Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      28   0.97 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   3.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   3.9  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   5.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   6.8  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 467 AVISRFCVLDQYLSYFFLSVIFN-RFVCQIYYANFSRFK 354
           A I+   V    +++ FLS+IF   F+C I++    RFK
Sbjct: 267 AYIALNAVASVVIAFVFLSLIFFISFICPIWFIKLQRFK 305


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 476 HLYAVISRFCVLDQYLSYFFLSVIF 402
           HL A ISRF +LD  L +F +S  F
Sbjct: 185 HL-ATISRFILLDSMLLFFIISTFF 208


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 116  SELAGVTARVSPSSLKYLASYKYW--HHIRH*PTTIWTQSQTARSLQLPL 259
            SEL G +  +  S L+Y   YK W  H       T WT     R+  LPL
Sbjct: 927  SELTGSSNYMQESDLEY--PYKRWFPHVFMDSDYTQWTHDSDIRNRMLPL 974


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 446  VLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVIDLYNGLEI 303
            +L QY++    S+      C++   + S    +L+++ V D+Y+ L+I
Sbjct: 2442 LLTQYVNANIPSISMETTACEVVGTSLSLLNKVLVENEVGDIYSYLKI 2489


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 151 IIFKISRVL*ILASYSTLTYNNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRSI 330
           ++ K S+V   LA   ++  +     T   +  ++PLL   + SYR  +     PL RS+
Sbjct: 4   LLTKSSQVFDFLADRLSVRKSRRFWETQENLESSTPLLQEPQQSYRSNSFNELPPLSRSV 63

Query: 331 T 333
           T
Sbjct: 64  T 64


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 202 LTYNNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRS 327
           ++Y N+   T + + P S  L  IKYS      E+ + LY+S
Sbjct: 600 MSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKS 641


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 449 CVLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVID 324
           C+LD +       ++FN+ + ++   +  RFK   IK  V+D
Sbjct: 66  CLLDVHCEVMKTGMLFNQQILKVIVESIDRFK---IKKVVVD 104


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 165 ISRLINIGIIFDTNLQQFGHNHKQRDHSSFPFIEFHQIL 281
           +S + + GI+FD  +  +     ++  + FPF+E   +L
Sbjct: 233 VSSIEDHGIVFDIGINNYTGFLSKKHINDFPFVEGQSLL 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,647
Number of Sequences: 5004
Number of extensions: 40364
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)