Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    28   4.0  
10_08_0618 + 19307658-19308584,19308690-19309082                       28   5.2  
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123     27   6.9  

>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 125 AGVTARVSPSSLKYLASYKYWHHIRH*PTTIWTQSQTA 238
           AG+  +V  S +   +S + WH     P  + TQSQ+A
Sbjct: 289 AGLRPKVKTSRIPGASSTEEWHESEQEPAEVLTQSQSA 326


>10_08_0618 + 19307658-19308584,19308690-19309082
          Length = 439

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 156 DDGETRAVTPANSDWVVYCITHLFL*GRASVISL-L*NG*INMYDL*NRKKKK 1
           D+ + RA+  A  DW+VY  T + +    S I+  L  G I M     R++K+
Sbjct: 204 DEADVRAIATAQHDWIVYFATKMRVFAFCSTITKHLFRGRIKMALALRRRQKE 256


>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
          Length = 369

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 107 TTQSELAGVTARVSPSSLKYLASYKYWHHIR 199
           T+ +++A + ++++ +SL  LAS+  WH +R
Sbjct: 74  TSPADVAWLKSQLASNSLPLLASHDAWHRLR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,796
Number of Sequences: 37544
Number of extensions: 211228
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)