Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    30   1.2  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    30   1.2  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    30   1.2  
Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81571-2|CAB04611.1|  202|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 196 STLTYNNLDTITNSAITPASPLLNSIKYSY 285
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 196 STLTYNNLDTITNSAITPASPLLNSIKYSY 285
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 521 SALTINNLSLIVSGLLTLACPLLTSIAGQY 550


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 196 STLTYNNLDTITNSAITPASPLLNSIKYSY 285
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical
           protein K10G4.2 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   FLRFYRSYIFIYPFHSRDITLARPYKNKCVI 100
           F+ F+R+ +  YPFH R  +L +     C +
Sbjct: 63  FMTFFRALVMRYPFHQRINSLVKSKAGLCAV 93


>Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical
           protein F33H2.2 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  LRFYRSYIFIYPFHSRDITL 70
           LRF  S++ +YP+H  DIT+
Sbjct: 66  LRFSESHLMLYPYHLSDITV 85


>Z81571-2|CAB04611.1|  202|Caenorhabditis elegans Hypothetical
           protein M01G12.2 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 211 NNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRSIT*DLINISLNRE 366
           N  + ITN    P+ P+ N     +++KN ++S    + +    IN+  N E
Sbjct: 2   NFSNQITNRNFNPSPPVWNFAISEFKKKNFKLSNGKLKKMNFIWINLETNME 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,129
Number of Sequences: 27780
Number of extensions: 212063
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)