Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 216 FGHNHKQRDHSS 251
           + HNH Q  HSS
Sbjct: 425 YNHNHNQARHSS 436


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 217 LDTITNSAITPASP 258
           +DT+  S +TP SP
Sbjct: 903 VDTVARSNVTPRSP 916


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 184 LASYSTLTYNNLDTITNSAITPASPLLNSI 273
           L S S +  N+ +  TNS+   +SP + SI
Sbjct: 532 LTSSSNVNNNSGNGNTNSSARDSSPAIESI 561


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 108 RPSLSWLV*QREFHHH 155
           RP ++WL    E +HH
Sbjct: 51  RPEITWLKDGIELYHH 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,971
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)