Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241...    69   2e-12
06_01_0854 - 6490425-6491639                                           28   4.0  
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    27   9.1  

>12_02_1093 +
           26023692-26023865,26023959-26024026,26024155-26024198,
           26024287-26025035,26025506-26025595,26026174-26026235,
           26026360-26026465
          Length = 430

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = +2

Query: 68  GGARGSWGERANQDLKHTRGKSFKHEKTKKKRGSYRGGAIDTGVHSIKFED 220
           GGA   +G +A + L   RG+ F+HEKTKKKRG+YRGG ID   HSIKF D
Sbjct: 376 GGADSGYGAKAQEVLGQVRGRGFRHEKTKKKRGTYRGGQIDLQTHSIKFND 426


>06_01_0854 - 6490425-6491639
          Length = 404

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 109 ILICSFTPRATSSTLLLIKHN 47
           +L+ S  PRAT+STLL ++H+
Sbjct: 8   LLLLSLPPRATASTLLSLRHH 28


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  GGARGSWGERANQDLKHTRGKSFKHEKTKKKRGSYRGGAI 187
           GG R S G  ++  ++H+   S  H  +    GSY GG +
Sbjct: 114 GGGRTSGGGGSSYSVEHSPSPSPLHPYSDSGSGSYGGGLV 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,870
Number of Sequences: 37544
Number of extensions: 241876
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)