Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E10f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE006464-8|AAK61240.1|  615|Homo sapiens similar to AK001902 pro...    35   0.20 
M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternati...    33   0.61 
M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternati...    33   0.61 
M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.                 33   0.61 
BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.        33   0.61 
BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor, argini...    33   0.61 
AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor, argini...    33   0.61 
AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.           33   0.61 
U87279-1|AAD00626.1|  221|Homo sapiens splicing factor SRp30c pr...    30   4.3  
U30825-1|AAA93069.1|  221|Homo sapiens SRp30c protein.                 30   4.3  
BC093973-1|AAH93973.1|  221|Homo sapiens splicing factor, argini...    30   4.3  
BC093971-1|AAH93971.1|  221|Homo sapiens splicing factor, argini...    30   4.3  
AL021546-5|CAA16498.1|  221|Homo sapiens splicing factor, argini...    30   4.3  
BC017762-1|AAH17762.1|  163|Homo sapiens FLJ22639 protein protein.     29   7.5  
AK026292-1|BAB15434.1|  163|Homo sapiens protein ( Homo sapiens ...    29   7.5  

>AE006464-8|AAK61240.1|  615|Homo sapiens similar to AK001902
           protein.
          Length = 615

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +2

Query: 143 FPESLPPREQSAVVLSRILPDGAWRNLTDHILDVCYENRPRTYTNTCPGQGLLHCLMYQM 322
           FPE +PPR +   + + + P+     +  HI+D    + P T+T++   Q  + C++Y +
Sbjct: 29  FPEEVPPRAEEITIPADVTPE----KVPTHIVDYS-ASSPVTHTSSLFPQANVVCVVYDV 83

Query: 323 IENCPEESLR 352
            E    E +R
Sbjct: 84  SEEATIEKIR 93


>M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 248

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 292

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.
          Length = 201

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 233

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 146 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 181


>AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>U87279-1|AAD00626.1|  221|Homo sapiens splicing factor SRp30c
           protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>U30825-1|AAA93069.1|  221|Homo sapiens SRp30c protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>BC093973-1|AAH93973.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>BC093971-1|AAH93971.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>AL021546-5|CAA16498.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 158 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 250
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>BC017762-1|AAH17762.1|  163|Homo sapiens FLJ22639 protein protein.
          Length = 163

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 245 CYENRPRTYTNTCPGQGLLHCLMYQM-IENCPEESLRKDDVCSPVSSLSGFNYMFSQSMY 421
           C  +R  T     P QGLLHCL   + +    EE   + +V  P S   G  + +     
Sbjct: 88  CLPSRCPTEKRALPWQGLLHCLAVDVEVGQESEEKTERREV-EPTSEKRGGKFRWEVDGS 146

Query: 422 EDLEE 436
           E+ E+
Sbjct: 147 EEFEQ 151


>AK026292-1|BAB15434.1|  163|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22639 fis, clone HSI06816. ).
          Length = 163

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 245 CYENRPRTYTNTCPGQGLLHCLMYQM-IENCPEESLRKDDVCSPVSSLSGFNYMFSQSMY 421
           C  +R  T     P QGLLHCL   + +    EE   + +V  P S   G  + +     
Sbjct: 88  CLPSRCPTEKRALPWQGLLHCLAVDVEVGQESEEKTERREV-EPTSEKRGGKFRWEVDGS 146

Query: 422 EDLEE 436
           E+ E+
Sbjct: 147 EEFEQ 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,475,923
Number of Sequences: 237096
Number of extensions: 2002390
Number of successful extensions: 4471
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4471
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)