Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0600 - 17856213-17856382,17856434-17857393,17857644-178578...    30   0.98 
04_01_0128 + 1398190-1398480,1399245-1399505                           28   5.2  
02_05_0166 + 26412217-26413403,26413918-26414800                       27   6.9  
08_02_1461 - 27299891-27301870                                         27   9.1  

>04_03_0600 -
           17856213-17856382,17856434-17857393,17857644-17857808,
           17858357-17858399
          Length = 445

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 21  YGHLKFIGCPSNISIPCFMAITRDNSSIDSDCNTLTLCSGATALSMAVVRSVTFIFGFIG 200
           YG+ K I  P +    C    TR N+ ++  C  + L SG       V  ++  +FGF+G
Sbjct: 28  YGNCKNI--PGHFDCTCPKG-TRGNAFVEGACQKIILTSGVRIAIGVVAGALVGLFGFLG 84


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 349 HGRNRQGGGTYPRGLTRRPTTSKP 278
           HGR        PR ++ RPTT+ P
Sbjct: 65  HGRQAAAAAVVPRAVSTRPTTTNP 88


>02_05_0166 + 26412217-26413403,26413918-26414800
          Length = 689

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 461 SLPGVKWLPEPIDIYIIYNVNAATHLEKH*PPK 363
           S  GV   PEPID+ ++  V  A   EK  PP+
Sbjct: 70  SFSGVSHPPEPIDVDLMSTVYVAIDEEKPEPPE 102


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 355 LLHGRNRQGGGTYPRGLTRRPTTSK 281
           LL GR R GGG + RGL   P  S+
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,719
Number of Sequences: 37544
Number of extensions: 231653
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)