Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E09f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004868-1|AAO45224.1|  459|Drosophila melanogaster LD43280p pro...    50   2e-06
AF139063-1|AAD39473.1|  458|Drosophila melanogaster origin recog...    50   2e-06
AE013599-3960|AAF47276.1|  459|Drosophila melanogaster CG2917-PA...    50   2e-06
BT012497-1|AAS93768.1|  478|Drosophila melanogaster GH28815p pro...    28   8.8  
AE014297-712|AAG22134.2|  478|Drosophila melanogaster CG33722-PC...    28   8.8  
AE014297-711|AAO41516.1|  478|Drosophila melanogaster CG33722-PB...    28   8.8  

>BT004868-1|AAO45224.1|  459|Drosophila melanogaster LD43280p
           protein.
          Length = 459

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 40/68 (58%)
 Frame = -2

Query: 232 NFQFETISKLSPMKPNINVTDLTTAIDNAVAPEHRVKVLQSLSILELSLVIAMKHGMEIF 53
           NF F  ++ L P  P+I    +  A+ +    + ++++L  LS+LEL L+IA+KH  +I+
Sbjct: 303 NFLFRLVAHLRPQSPHITAEKMA-AVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIY 361

Query: 52  DGQPMNFK 29
           D    NF+
Sbjct: 362 DRDSFNFE 369


>AF139063-1|AAD39473.1|  458|Drosophila melanogaster origin
           recognition complex subunit4 protein.
          Length = 458

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 40/68 (58%)
 Frame = -2

Query: 232 NFQFETISKLSPMKPNINVTDLTTAIDNAVAPEHRVKVLQSLSILELSLVIAMKHGMEIF 53
           NF F  ++ L P  P+I    +  A+ +    + ++++L  LS+LEL L+IA+KH  +I+
Sbjct: 302 NFLFRLVAHLRPQSPHITAEKMA-AVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIY 360

Query: 52  DGQPMNFK 29
           D    NF+
Sbjct: 361 DRDSFNFE 368


>AE013599-3960|AAF47276.1|  459|Drosophila melanogaster CG2917-PA
           protein.
          Length = 459

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 40/68 (58%)
 Frame = -2

Query: 232 NFQFETISKLSPMKPNINVTDLTTAIDNAVAPEHRVKVLQSLSILELSLVIAMKHGMEIF 53
           NF F  ++ L P  P+I    +  A+ +    + ++++L  LS+LEL L+IA+KH  +I+
Sbjct: 303 NFLFRLVAHLRPQSPHITAEKMA-AVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIY 361

Query: 52  DGQPMNFK 29
           D    NF+
Sbjct: 362 DRDSFNFE 369


>BT012497-1|AAS93768.1|  478|Drosophila melanogaster GH28815p
           protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 LCSGATALSMAVVRSVTFIFGFIGDSLLIVSN 224
           L SG T L +  V +    FGFI DSL  VSN
Sbjct: 412 LPSGETLLELNFVPNAIVHFGFIKDSLNAVSN 443


>AE014297-712|AAG22134.2|  478|Drosophila melanogaster CG33722-PC,
           isoform C protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 LCSGATALSMAVVRSVTFIFGFIGDSLLIVSN 224
           L SG T L +  V +    FGFI DSL  VSN
Sbjct: 412 LPSGETLLELNFVPNAIVHFGFIKDSLNAVSN 443


>AE014297-711|AAO41516.1|  478|Drosophila melanogaster CG33722-PB,
           isoform B protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 LCSGATALSMAVVRSVTFIFGFIGDSLLIVSN 224
           L SG T L +  V +    FGFI DSL  VSN
Sbjct: 412 LPSGETLLELNFVPNAIVHFGFIKDSLNAVSN 443


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,919,364
Number of Sequences: 53049
Number of extensions: 381651
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)