Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    32   0.060
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.10 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.18 
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.9  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   3.9  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    25   5.2  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   5.2  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   6.8  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   9.0  

>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = -2

Query: 520 PPRSSNISEQR*XEAVHGLRPKRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSP 341
           P  S  +++QR  + +     +++    + S+T+SSP+       SP   +R  +++ S 
Sbjct: 206 PNSSGTLTDQRGLDTIKHKSIEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSK-SK 264

Query: 340 PPNSDSLKRKN 308
             NS+S KR+N
Sbjct: 265 VRNSNSTKRRN 275


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 508  SNISEQR*XEAVHGLRP----KRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSP 341
            S++S QR   ++  ++P    K     A R + +  P+ G+ +   PAP + P     +P
Sbjct: 987  SSVSSQRSSTSIIPIKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTP 1046

Query: 340  PPNSDSLKRKN 308
            PP   S  +++
Sbjct: 1047 PPRKSSASQRS 1057


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 397 VTKVSPAPAMRPGYTRTSPPPNSDSLKRKNSAGRLFGS 284
           VT    +     G T +  PP+S+S K K S GRLF S
Sbjct: 657 VTPKQKSSTANKGSTSSPSPPSSESKKTKRSWGRLFVS 694



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 442 AAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSPPP 335
           +A+ SE  SS   GT+   +PAP  +P  + TS PP
Sbjct: 430 SAVASE--SSLSEGTLALKAPAPENKPEKSSTSKPP 463


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 1   LPTRNIGRTTSNTVIEHQMTEMKK*LRYMMAKR 99
           +PT  + R T NT+ +H + ++   L+Y  AKR
Sbjct: 176 VPTATVYRPTVNTMYDHIVVKLVTGLKYEQAKR 208


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 466  LRPKRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSP 341
            L P +S  A + S    +PQH +   +S APA      R+SP
Sbjct: 1519 LPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRSSP 1560


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 463 RPKRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSPPPNSDSL 320
           + K+S AA+  S  V   QH    +        PG+T+T    ++D +
Sbjct: 64  KKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQV 111


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 463 RPKRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSPP 338
           +P  SR+ ++   TV S QH  + ++SP+P+     T++  P
Sbjct: 381 QPSSSRSPSVDPNTVKSAQH--IPRMSPSPSASALKTQSHVP 420


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 219 SARTGPGCEQRGTPSGRP 166
           S    PG EQR TP GRP
Sbjct: 287 SGELPPGWEQRYTPEGRP 304


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 294 KRPALFLRFKESEFGGGEVRVY 359
           KRP L L F+E + GG  +  Y
Sbjct: 32  KRPELKLEFEEHKIGGASIDAY 53


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 512 IEQYLGTAVVGGGAWVEAEALQSRRHEVGDGVVSAARHR 396
           I QY    +  G A+ +   +++ RHE  +G+ S  R R
Sbjct: 285 IHQYCVDMIKSGQAYADDTDVETMRHERTEGIPSKHRDR 323


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 294 KRPALFLRFKESEFGGGEVRVYPGRIAGAGETFVTVPCCGDDTVSDLMAAALERFGLNPC 473
           KR AL  R    +FGG EV       AGAG   +++   G    S ++ A     G+  C
Sbjct: 225 KRDALIHRI---QFGGDEVVKAK---AGAGSATLSMAYAGARMASSVLRALAGESGVEEC 278

Query: 474 T 476
           T
Sbjct: 279 T 279


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 472 HGLRPKRSRAAAMRSETVSSPQHGTVTKVSPAPAMRPGYTRTSPP 338
           H L PKR    ++   ++S+P   TV   SP     P + +  PP
Sbjct: 120 HPLPPKR---VSLGIPSISNPPVDTVISDSPTSPHPPSFVQPHPP 161


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 421 VSSPQHGTVTKVSPAPAMRPGYTRTSPPPNS 329
           ++ P +  +T        RP Y+R+SP P++
Sbjct: 417 LNQPNYANLTPTPQVSPKRPTYSRSSPLPSA 447


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 147 NERELVSAALRAFHVARNPDQFELTDALAGDEPPLKDPTPLAHVTRLPNKRP 302
           N+ E V  +      AR P  FEL +++   E     P  L ++  L ++ P
Sbjct: 21  NQLENVDKSSIPLSKARKPSDFELNNSIEDAEKIKTYPAALRYIFALNSRHP 72


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 6   DQEHRPDHKQHRDRTPDDRDEEVVKVYDGEAAWSRR 113
           D  HR   + HRD     R+E     Y  + ++ +R
Sbjct: 364 DYRHRRKERDHRDDQSSFRNERFSNYYGDDRSYHKR 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,419
Number of Sequences: 5004
Number of extensions: 38942
Number of successful extensions: 161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)