Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329D07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 29 0.42
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.8
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 25 6.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 9.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.0
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.42
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = +1
Query: 58 SSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKN 237
SSE L+EG + + +L+ Y+ + G GA Y DV ++ FK
Sbjct: 16 SSETSLLTEGPESDEEDEGPLLKQYRLKNMLGY-GA-CSTVYLAVDVSTNIEYAIKEFKK 73
Query: 238 IALYGTNEFRLNYVKADIGAMEAHAVMTLE 327
+L +FRL ++ ++G+ T+E
Sbjct: 74 TSLRRREKFRLMQLEKELGSFNDMDSSTIE 103
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 122 WSIINSRIPRGCRELNYQIHTQFRTSNSH 208
W +I +RIP+ C + +Y ++ +R SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 67 DEKLSEGEKKLSHNILAILEHYKQPDP--TGLPGAKLPDPYPV---PDVKQSLTLGTMNF 231
D+ +S G + HN + ++H DP TGLP D P+ + + S+ +G +
Sbjct: 265 DDSVSAGAAFIPHNPMDSIDHLDVNDPTATGLPVLPASDIDPLNLTGNTQDSMIIGQQTY 324
Query: 232 KNIALYGT 255
+ GT
Sbjct: 325 PSHGSSGT 332
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +3
Query: 291 RSNGGPRRDDSRKIASTRQLHLRDVVQFGSGPVHCSHNRTEGDSERGPSSRARR 452
RSNG R +DSR R H + S N E D RAR+
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQ 1596
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = -3
Query: 426 VRCHPQSCYVNSERAPNRIEPRREGVVAACLQFFESHHGVGLHC 295
+ C Q C A +E R+G++ + +F++ V + C
Sbjct: 226 ILCIHQLCEKKQFSAQQEVEQLRKGILQSLCEFYDDLRKVKIRC 269
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 13 ILFQFRNCQEIPEEVSSEDEKLSEGEKKLS 102
++FQ++ C E+ E + S + + E K LS
Sbjct: 154 MVFQYQRCVELNENLESLENGVEEVSKSLS 183
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 378 SGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRH 479
SG H HN DS +S A + ++ HRH
Sbjct: 1304 SGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRH 1337
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 291 RSNGGPRRDDSRKIASTRQLH 353
+SNG +DD R+ A T+ +H
Sbjct: 360 KSNGETEKDDGRRRALTKAIH 380
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 28 RNCQEIPEEVSSEDEKLSEGEKKLSHNILAILEHY 132
++ +E+PEEVS ++E L H ++L+H+
Sbjct: 521 KDYEELPEEVSETSINIAEHTPVLKHT-SSLLDHH 554
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/42 (26%), Positives = 16/42 (38%)
Frame = +1
Query: 34 CQEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLP 159
C E + + K++ G NI A+L H P P
Sbjct: 161 CYENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASPANFP 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,497
Number of Sequences: 5004
Number of extensions: 39583
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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