Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329D07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039 30 1.3
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 29 1.7
10_08_0307 - 16654691-16654890,16656230-16656698 29 2.3
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241... 29 3.0
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 29 3.0
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 5.2
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 28 5.2
03_02_0536 - 9284079-9286034 27 6.9
06_03_0809 + 24814590-24816593 27 9.1
>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
Length = 218
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 306 PRRDDSRKIASTRQLHLRDVVQF--GSGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRH 479
PR ++R A+ RQ L+++++ G G S R+ S P+S + +Q K R
Sbjct: 12 PRLRNTRSRATRRQPGLQELLRTVRGRGNEQDSKGRSHC-SRSAPASPSSERDQRMKRRR 70
Query: 480 GLIGQQHRCEPGK 518
+I H CE G+
Sbjct: 71 KMIEADHSCEDGE 83
>06_03_0151 +
17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 423 RCHP--QSCYVNSERAPNRIEPRREGVV-AACLQFFESHHGVGLHCSDIG 283
+C P C+V + P+ I P ++ AC F + GLHC D G
Sbjct: 428 QCGPVLMGCFVTVKAPPSSILPSGSSLLDKACETSFSEYELNGLHCQDTG 477
>10_08_0307 - 16654691-16654890,16656230-16656698
Length = 222
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 50 RRCRVKMKNSRKAKKNSVIISWLFWSIINSRI 145
R C + ++ R+ K +++SW W NSR+
Sbjct: 87 RHCPLGVEKRRRVKSLLILVSWEIWKERNSRV 118
>10_01_0228 +
2417187-2418061,2418127-2418319,2419011-2419025,
2419859-2419975
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 372 IEPRREGVVAACLQFFESHHGVGLHCSDIG 283
+EP R G L F E H+ V L C+DIG
Sbjct: 296 VEPGRHGAAPTILGFVEEHNEV-LLCTDIG 324
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 49 EEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYP 186
E+ +DEK E EK S N + E K+ DP+ L A L YP
Sbjct: 286 EKKEGDDEKEKEKEKDDS-NAAEVEEKDKEKDPSALAAANLYMHYP 330
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 49 EEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGL 156
E+V +D KLSE L +L+IL H+K+ + G+
Sbjct: 90 EQVLLDDVKLSEQVMDLIFFVLSILSHWKKENHLGV 125
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +1
Query: 40 EIPEEVSSEDEKLSEGEKKLSH-----NILAILEHYKQPDPTGL 156
+I E+ + E E L++GE+K SH N++A +E + P+ L
Sbjct: 410 KIEEQETPEKENLTKGEEKESHDMMLDNVVAKIEEQETPEKENL 453
>03_02_0536 - 9284079-9286034
Length = 651
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 46 PEEVSSEDEKLSEGEKKLSH-NILAILEHYKQPDPTGLPGAKLPDPYPVP 192
P E E K E E ++ L E YK+P+P + P+P P P
Sbjct: 365 PREPEPEPVKEEEPEPDMNEIKALPAPEDYKEPEPEKVEEEVKPEPPPQP 414
>06_03_0809 + 24814590-24816593
Length = 667
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 109 ILAILEHYKQPDPTGLPGAKLPDPYPVPDV 198
+L L+H +PD T LP P P P P V
Sbjct: 233 MLVPLKHRPKPDVTVLPEPGPPSPAPAPAV 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,248
Number of Sequences: 37544
Number of extensions: 293503
Number of successful extensions: 831
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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