Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329D06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 177 6e-46
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 2e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.42
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.2
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 3.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 3.0
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 5.2
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.0
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 177 bits (432), Expect = 6e-46
Identities = 82/145 (56%), Positives = 110/145 (75%)
Frame = +3
Query: 87 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 266
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 267 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 446
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 447 LGPEKTSFFQALSIPTKISKGTIEI 521
+ P KTSFFQAL IPTKI++GTIEI
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEI 152
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 2e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +3
Query: 24 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 203
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 204 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 368
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 369 ENKVQAP-ARPGAIAPLSVVIPA 434
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 217 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 324
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 283 RAGLLSRWSLMALRIIVFFPMSTILEPR 200
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 361 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 236
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +1
Query: 154 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 333
P+T S SV PV+ S T+ + P +T T + NC TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544
Query: 334 AETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPAS 450
++ + TNC T + + P+ + +TP +
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 520 ISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 398
IS P + L+G+ AW E S R + T+ +AP
Sbjct: 290 ISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 457 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 287
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 286 SRAGL 272
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 376 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 215
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 406 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFRRVLLK 519
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 135 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 281
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 361 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFRRVLLK 519
+ +R++ R L+ P +S PP TPA+ + + ++P+ R++L+
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILE 131
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 493 VGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTSTRSPRVN-- 326
+G + +W F S P+P G+T D+ + PG+ +++F + ++ + P N
Sbjct: 679 IGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVEQKKPENNVL 736
Query: 325 TKP 317
TKP
Sbjct: 737 TKP 739
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,524
Number of Sequences: 5004
Number of extensions: 51809
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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