Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329D06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   230   5e-61
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   6.2  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   8.1  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   8.1  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  230 bits (562), Expect = 5e-61
 Identities = 103/154 (66%), Positives = 129/154 (83%)
 Frame = +3

Query: 60  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 239
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 240 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 419
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 420 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 521
           V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEI 154


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
 Frame = +3

Query: 33  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 212
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 213 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 386
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 387 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEI 521
            AR G +A  +VV+P    +          + L +PTK+ KG I +
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITL 170


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +1

Query: 217 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQ 390
           CSW        P S+T +   QP+ N     R     C+P     ++S    W T S+  
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332

Query: 391 LVPVPLPHCQSSFP 432
            +P P P+  +  P
Sbjct: 333 TLPTPAPYVSTQAP 346


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +1

Query: 208 PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 375
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 15  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 128
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 424 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 314
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 313 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 486
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 487 SLPKFRRV 510
            L  F ++
Sbjct: 511 LLQNFLKL 518


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 363 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 512
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 374 VLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 225
           +L     DL E S   HE+   LDVW++ L      Q +  G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 277 QPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPVPLPHCQSSFPPTTPAS 450
           Q  +N C ++ +     S  + S ++ ++C+   T + +Q  P  +P C+ S    TPA+
Sbjct: 90  QSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148

Query: 451 VQRKP 465
           VQ  P
Sbjct: 149 VQCVP 153


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 385 LQLVPVPLPHCQSSFPPTTPASVQRKPL 468
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 33  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 203
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339

Query: 204 GSSIVLMGKNTMMRKAIKD 260
           G    L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 33  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 203
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322

Query: 204 GSSIVLMGKNTMMRKAIKD 260
           G    L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 247 KPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 426
           K S  T   +    N C T + +  +C      + +    W +++  Q  P PLP C+S+
Sbjct: 586 KSSHCTGNPVSIDCNGCPTPKRSGINCDNRMAEVNNQAGRWSSEATSQ--PAPLP-CKSA 642

Query: 427 FPPTTPASVQRKPLS 471
             PT  +S    P S
Sbjct: 643 -NPTEDSSQDAPPTS 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,702
Number of Sequences: 27780
Number of extensions: 305606
Number of successful extensions: 1168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)