Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329D04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 182 2e-47
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 141 7e-35
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 132 2e-32
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 63 2e-11
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 41 1e-04
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 36 0.003
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 35 0.006
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 35 0.008
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 33 0.020
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 32 0.060
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.079
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 31 0.079
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.079
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.10
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 31 0.14
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.14
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 31 0.14
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 30 0.24
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 30 0.24
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 30 0.24
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 29 0.42
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 29 0.42
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 29 0.42
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.42
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 29 0.56
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 29 0.56
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 0.73
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 0.97
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 0.97
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.3
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 1.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.7
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 1.7
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 1.7
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 1.7
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 2.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 5.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 5.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 5.2
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 6.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 9.0
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 182 bits (444), Expect = 2e-47
Identities = 88/144 (61%), Positives = 108/144 (75%), Gaps = 1/144 (0%)
Frame = +2
Query: 68 KTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAI 247
KT + K PWVE YRPKT+D + Q VQVL++ L +LPH+LFYG PGTGKTS I
Sbjct: 10 KTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTI 69
Query: 248 LAAAKQLFG-DISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGKRADGRPCPSYKLVI 424
LA +++LFG + + RVLELNASDERGI ++R+KVKSFA+ TV+ K DG PCP +K++I
Sbjct: 70 LALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNK-VDGYPCPPFKIII 128
Query: 425 LDEADSMTTAAQAALRRTMERETR 496
LDEADSMT AQAALRRTME R
Sbjct: 129 LDEADSMTQDAQAALRRTMESYAR 152
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 141 bits (341), Expect = 7e-35
Identities = 65/134 (48%), Positives = 99/134 (73%)
Frame = +2
Query: 98 PWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
PWVEKYRP ++D+V +++ L + +S +PH+LFYGPPGTGKTS ILA A++++G
Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83
Query: 278 ISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAA 457
R++++ELNASD+RGI VR+++K+FA S ++ ++K++ILDEAD+MT AA
Sbjct: 84 NYRNQLMELNASDDRGIDAVREQIKNFA----STRQIF---ASTFKMIILDEADAMTLAA 136
Query: 458 QAALRRTMERETRH 499
Q ALRR +E+ T++
Sbjct: 137 QNALRRVIEKYTKN 150
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 132 bits (320), Expect = 2e-32
Identities = 69/129 (53%), Positives = 86/129 (66%)
Frame = +2
Query: 98 PWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
PWVEKYRP +DDIV E + L+ G++PHL+ G PG GKT++IL A L G
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 278 ISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAA 457
++ VLELNASDERGI VVR+++K+FAQ V P +K++ILDEADSMT A
Sbjct: 82 AYKEGVLELNASDERGIDVVRNRIKAFAQKKVI------LPPGRHKIIILDEADSMTAGA 135
Query: 458 QAALRRTME 484
Q ALRRTME
Sbjct: 136 QQALRRTME 144
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 63.3 bits (147), Expect = 2e-11
Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 22/159 (13%)
Frame = +2
Query: 101 WVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDI 280
W+++YRPKT+ + ++ + L S + PHLL YGP G GK + ++A ++L+G
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 281 SR-------------DRVLELN-ASDERGIQVVRDKVKSFAQL--------TVSGKRADG 394
S + L++N S +++ V ++ ++ + D
Sbjct: 63 SEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122
Query: 395 RPCPSYKLVILDEADSMTTAAQAALRRTMERETRHYTVL 511
+ +K+V+++ AD +T AQAALRRTME+ + + ++
Sbjct: 123 QAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLI 161
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 41.1 bits (92), Expect = 1e-04
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Frame = +2
Query: 74 TNKKK--PPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSG-----------------GDL 196
+NKK+ P W KY P ++ DI VVQ L++ L G
Sbjct: 350 SNKKESQPSQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLY 409
Query: 197 PHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKV----KSFAQ 364
+L GPPG GKT+A AK + VLELNASD R +++ +++ S +
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAK-----LEGYDVLELNASDTRSKRLLDEQLFGVTDSQSL 464
Query: 365 LTVSGKRADGRPCPSYKLV-ILDEADSMTT 451
G +A+ +LV I+DE D M++
Sbjct: 465 AGYFGTKANPVDMAKSRLVLIMDEIDGMSS 494
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDER 322
L YGPPG+GKTS + A A +L DI + E +D+R
Sbjct: 246 LLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDR 284
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 101 WVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPH--LLFYGPPGTGKTSAILAAAKQL 268
W EKY P+ D+ + +++ + L LL GP G GK++A+ AK+L
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 34.7 bits (76), Expect = 0.008
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLE-LNASDERGIQVVRDKVKSFAQLT 370
+L +GPPG GKT A A +L F IS ++ ++ E+ ++ V ++ KS A
Sbjct: 211 VLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLA--- 267
Query: 371 VSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMER 487
PC L+ +DE D++T ++A +R MER
Sbjct: 268 ---------PC----LMFIDEIDAVTPKRESA-QREMER 292
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L +GPPG GKT A A +
Sbjct: 529 VLLWGPPGCGKTLLAKAVANE 549
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELN 307
L GPPGTGKT I+ L D+SR + N
Sbjct: 1149 LIQGPPGTGKTKTIIGIISALLVDLSRYHITRPN 1182
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.9 bits (69), Expect = 0.060
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 152 EVVQVLRECLSGGDLPHLLFYGPPGTGKT---SAILAAAKQLFGDIS 283
E+ Q LRE + G +L +GPPGTGKT A+ AK F IS
Sbjct: 403 ELFQGLREPVQG-----MLLFGPPGTGKTMLARAVATEAKATFFSIS 444
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 31.5 bits (68), Expect = 0.079
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 GGDLPH-LLFYGPPGTGKTSAILAAAKQLFGDISR 286
G D P +L YGPPGTGKT + A A + R
Sbjct: 164 GIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIR 198
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 31.5 bits (68), Expect = 0.079
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGK 382
++ G G GKT+ A Q + +VLE+NASD+R V +KV S +S
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ-----AGYKVLEINASDDRTAHTVHEKVSS----AISNH 469
Query: 383 RA-DGRPCPSYKLVILDEADSMTTAAQAALRRTMERETR 496
A +P VI+DE D A AL +E + +
Sbjct: 470 SALSSQP----TCVIVDEIDGGDPAFVRALLSLLESDEK 504
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.5 bits (68), Expect = 0.079
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
LL YGPPG GKT A AKQ
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ 148
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLELNASD-ERGIQVVRDKVKS 355
+L YGPPGTGKT A A +L F I +L + + E ++ V +K ++
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARN 745
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASD 316
L +GPPGTGKT ++ +QL + R+L AS+
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLV--LRNKRILVCGASN 263
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L YGPPGTGKT + A A +
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAE 336
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL-NASDERGIQVVRDKVKSFAQLT 370
+LF+GPPGTGKT A A + F + +L + E ++ + DK ++ A
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCV 593
Query: 371 V 373
V
Sbjct: 594 V 594
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L YGPPGTGKT A A +
Sbjct: 261 ILMYGPPGTGKTLMARAVANE 281
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL 268
+L YGPPGTGKT A A L
Sbjct: 169 VLLYGPPGTGKTLLARAVAASL 190
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 185 GGDLPH-LLFYGPPGTGKTSAILAAA 259
GG LP +L GPPGTGKT A A
Sbjct: 296 GGKLPRGVLLTGPPGTGKTMLARAVA 321
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQ---LFGDISRDRVLELNASDERGIQVVRD 343
L +GPPGTGKT A A Q F ++ +++++ D G ++VRD
Sbjct: 223 LMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGD--GAKLVRD 269
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++ YGPPGTGKT A A +
Sbjct: 216 IMLYGPPGTGKTLCARAVANR 236
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAA 259
+L YGPPGTGKT A A
Sbjct: 182 ILLYGPPGTGKTLLARAVA 200
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Frame = +2
Query: 203 LLFYGPPGTGKT--SAILAAA 259
+LF+GPPGTGKT + LAAA
Sbjct: 303 VLFHGPPGTGKTLMARALAAA 323
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
Frame = +2
Query: 203 LLFYGPPGTGKT--SAILAA 256
+LF+GPPGTGKT + +LAA
Sbjct: 409 VLFHGPPGTGKTLMARVLAA 428
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 0.56
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 191 DLPHLLFYGPPGTGKTSAI--LAAAKQL----FGDISRDRVLELNASDE-RGIQVVRDKV 349
+LP+++ G PGTGKT+ +A +L GD+ ++ L ++ + V DKV
Sbjct: 7 ELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVDEDKV 66
Query: 350 KSFAQ--LTVSGKRADGRPCPSYKLVILD 430
+ + L G D C + ++D
Sbjct: 67 LDYLEPKLLKGGCIIDWHTCGLFSEELID 95
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL 268
+L YGPPGTGKT K L
Sbjct: 307 ILLYGPPGTGKTLIARQIGKML 328
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L +GPPGTGKT A A +
Sbjct: 495 MLLFGPPGTGKTMLARAVATE 515
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L YGPPGTGK+ A A +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 158 VQVLRECLSGGDLP--HLLFYGPPGTGKTSAILAAAKQLFGD 277
+++ R LS + P LF GP GTGKT A A +F D
Sbjct: 600 IRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALASFMFDD 641
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 107 EKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
E R +D ++ + + ++ LS + + G PG GKTS A+++ D
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRIIDD 229
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 206 LFYGPPGTGKTSAIL 250
L GPPGTGKT IL
Sbjct: 1290 LIQGPPGTGKTKTIL 1304
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 149 GEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
G ++++++E G +L GPP TGKT+ + A+ L D
Sbjct: 52 GVILKMIQEGRIAGRA--ILMAGPPSTGKTAIAMGMAQSLGSD 92
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 194 LPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDE 319
L +L G PG GKTS I A A++ + +++ +N SD+
Sbjct: 1559 LKPILLEGSPGVGKTSLITALARE-----TGHQLVRINLSDQ 1595
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 194 LPHLLFYGPPGTGKTSAILAAAKQLF 271
L LF GP G GKT+ A A+ LF
Sbjct: 532 LASFLFLGPTGVGKTALTKALAEFLF 557
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 198 RIYYFMDRRVPVKRVPYLPLQSNS---SEISVETACWN*MHPMNAVYKS 335
++ F + +P K Y+PL+SN+ + +T W M+P +VY S
Sbjct: 498 KVEEFANNSMPSKVGMYVPLESNTVYQHSPTYDTYGWQSMYPSYSVYPS 546
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 23 TGKISAGDKASTSGVKTTNKKKPPAP 100
T + S ASTS VKT +KK AP
Sbjct: 440 THRFSTASAASTSAVKTEKEKKMSAP 465
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++ YG PGTGKT A A Q
Sbjct: 228 VILYGAPGTGKTLLAKAVANQ 248
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 197 PHLLFYGPPGTGKTSAILAAAKQLFGDISRDR 292
P L GPPGTGKT + L SR R
Sbjct: 408 PLSLIQGPPGTGKTVTSASVVYHLATMQSRKR 439
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 36 LQETKRQLLELKLQIRKNLQLHGSKNIDRRQ*TI*WTKERLFK 164
L ++Q LELK KN ++ +DRR+ + ++LF+
Sbjct: 702 LMSNEKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFE 744
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 290 RVLELNASDERGIQVVRDKVKS 355
RV N S RGI+V + K+KS
Sbjct: 1118 RVTIFNGSHNRGIKVAKQKIKS 1139
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 185 GGDLPH-LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL 304
G +P + GPPGTGKT A A + F +S LE+
Sbjct: 325 GAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEM 368
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.8
Identities = 4/21 (19%), Positives = 15/21 (71%)
Frame = -2
Query: 142 HYIVYCLRSIFFDPWSWRFFL 80
+Y+++C+ + +D W+++ +
Sbjct: 1442 NYVLFCIHHVLYDAWAFQLIM 1462
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 110 KYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAK 262
KY T+ +D + L L+ ++F GPPG+GK+ +L +
Sbjct: 2487 KYAGNTVIPTLDTVRYAEFLNFSLTKNRC--VIFCGPPGSGKSMLMLGTLR 2535
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 251 QVWHSFYRYPAVHKIV 204
+VW++FY P +H IV
Sbjct: 339 RVWYAFYEKPRLHLIV 354
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQL 268
+ GPPGTGK+ L A + L
Sbjct: 390 IIQGPPGTGKSFVTLKAIETL 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,597
Number of Sequences: 5004
Number of extensions: 42385
Number of successful extensions: 200
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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