Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329D04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 153 6e-38
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 140 4e-34
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 137 5e-33
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 60 1e-09
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 34 0.054
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 34 0.071
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 34 0.071
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 34 0.071
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 31 0.38
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 31 0.66
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 31 0.66
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 31 0.66
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 31 0.66
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 31 0.66
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 31 0.66
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 31 0.66
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 30 0.87
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 30 0.87
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 30 0.87
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 29 1.5
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 1.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 1.5
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 29 2.0
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 29 2.0
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 29 2.7
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 29 2.7
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 28 3.5
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 28 3.5
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 28 3.5
Z92785-2|CAB07200.1| 344|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 28 4.7
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 27 6.2
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 27 8.1
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 27 8.1
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 8.1
AL021492-7|CAE17999.1| 282|Caenorhabditis elegans Hypothetical ... 27 8.1
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 27 8.1
AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical... 27 8.1
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 27 8.1
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 153 bits (372), Expect = 6e-38
Identities = 78/141 (55%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Frame = +2
Query: 65 VKTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSA 244
++ NK+ W EKYRPKT+DDI Q EVV +L+ L G DLPHLLFYGPPGTGKTSA
Sbjct: 5 MEVDNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSA 64
Query: 245 ILAAAKQLF-GDISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGKRADGRPCPSYKLV 421
LA +QLF +I DRVL+LNASDERGI VVR K++SF++ ++ + K++
Sbjct: 65 ALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRE--DVLKLKII 122
Query: 422 ILDEADSMTTAAQAALRRTME 484
ILDE D+MT AQAA+RR +E
Sbjct: 123 ILDEVDAMTREAQAAMRRVIE 143
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 140 bits (340), Expect = 4e-34
Identities = 72/140 (51%), Positives = 100/140 (71%)
Frame = +2
Query: 77 NKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAA 256
++K+ APWVEKYRPK + DIV +V+ L+ G++P+++ GPPG GKT+++ A
Sbjct: 4 SEKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWAL 63
Query: 257 AKQLFGDISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGKRADGRPCPSYKLVILDEA 436
A++L GD ++ VLELNASDERGI VVR ++K+FAQ V+ +GR +K++ILDEA
Sbjct: 64 ARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVT--LPEGR----HKIIILDEA 117
Query: 437 DSMTTAAQAALRRTMERETR 496
DSMT AQ ALRRTME T+
Sbjct: 118 DSMTDGAQQALRRTMEMYTK 137
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 137 bits (331), Expect = 5e-33
Identities = 73/146 (50%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Frame = +2
Query: 68 KTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAI 247
K T PWVEKYRP +D++V ++V+ L + + LPHLLFYGPPGTGKT+ +
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 248 LAAAKQLFGDIS-RDRVLELNASDERGIQVVRDKVKSFAQ---LTVSGKRADGRPCPSYK 415
LAAA+Q++ VLELNASDERGI VVR+ + +FAQ L ++ P +K
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVP-FK 138
Query: 416 LVILDEADSMTTAAQAALRRTMERET 493
LVILDEAD+MT AQ ALRR +E+ T
Sbjct: 139 LVILDEADAMTKDAQNALRRVIEKYT 164
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 59.7 bits (138), Expect = 1e-09
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Frame = +2
Query: 95 APWVEKYRPKTI--DDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQL 268
A WV+KYRPK + D VD + LS +PHLLF GP G GK + I ++L
Sbjct: 2 ALWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 269 FG------------------------DISRDRVLELNASDERGIQ---VVRDKVKSFAQL 367
+G +S + +E+ SD GI VV+D VK AQ
Sbjct: 62 YGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDV-GIYDRVVVQDLVKEMAQT 120
Query: 368 TVSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMER 487
+ + + S+K+V+L EADS+T AQ LRRTME+
Sbjct: 121 S----QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEK 156
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 203 LLFYGPPGTGKT---SAILAAAKQLFGDISRDRVLELNASDERGIQVVRD 343
+L YGPPGTGKT A+ A K F ++ +++++ D G ++VRD
Sbjct: 214 VLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGD--GAKLVRD 261
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 33.9 bits (74), Expect = 0.071
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 23 TGKISAGDKASTSGVKTTNKKKPPAP---WVEKYRPKTIDDIVDQ 148
T + S+ + STS V K P P WV+KY+PK + ++V Q
Sbjct: 251 TSESSSSSQVSTSSVVFQPKPSGPPPALSWVDKYKPKRMGELVGQ 295
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKVKSFA------QL 367
L G PG GKT+ A +QL +++E+NASD R + + K+ + Q
Sbjct: 344 LLSGSPGVGKTTCAYMACQQL-----GLQLVEMNASDVRSKKHLEAKIGELSGSHQIEQF 398
Query: 368 TVSGKRADGRPCPSYKLVILDEADSMT 448
+ K A + ++I+DE D M+
Sbjct: 399 FGAKKCAPQDNQKVHHILIMDEVDGMS 425
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 33.9 bits (74), Expect = 0.071
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDER 322
LFYGPPGTGK+S I A A + + E D+R
Sbjct: 201 LFYGPPGTGKSSFISALASHFGYSVCLLSLSERTLDDDR 239
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.071
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDER 322
LFYGPPGTGK+S I A A + + E D+R
Sbjct: 247 LFYGPPGTGKSSFISALASHFGYSVCLLSLSERTLDDDR 285
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 113 YRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQL 268
Y K + + + + V +LR+ + GG + L F+GPPG GKTS + A L
Sbjct: 481 YGMKDVKERIMEFIAVNLLRKSI-GGKI--LCFHGPPGVGKTSIAKSIATAL 529
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 428 VVFYGPPGTGKTLVARALANE 448
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 426 VVFYGPPGTGKTLVARALANE 446
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 428 VVFYGPPGTGKTLVARALANE 448
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 428 VVFYGPPGTGKTLVARALANE 448
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 426 VVFYGPPGTGKTLVARALANE 446
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 428 VVFYGPPGTGKTLVARALANE 448
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 203 LLFYGPPGTGKT---SAILAAAKQLFGDIS 283
+L +GPPG GKT A+ +KQ+F +IS
Sbjct: 214 ILLFGPPGNGKTLLAKAVAGESKQMFFNIS 243
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
++FYGPPGTGKT A A +
Sbjct: 428 VVFYGPPGTGKTLVARALANE 448
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 107 EKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHL-LFYGPPGTGKTSAILAAAKQLFGDIS 283
+K P + D +Q + E + G P L + GPPGTGKT + ++ +
Sbjct: 790 KKVTPYSYDPRKNQVKFTPSQVEAIKSGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNWP 849
Query: 284 RDRVLELNASDE 319
R L + S++
Sbjct: 850 NQRTLIVTHSNQ 861
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 30.3 bits (65), Expect = 0.87
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 182 SGGDLPHLLFYGPPGTGKT 238
+ G +++FYGPPGTGKT
Sbjct: 338 NNGLFRNVMFYGPPGTGKT 356
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQL 268
L +GPPGTGKT A A QL
Sbjct: 180 LLFGPPGTGKTLLARAVASQL 200
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 206 LFYGPPGTGKTSAILAAAKQL 268
L +GPPGTGKT A A QL
Sbjct: 188 LLFGPPGTGKTLLARAVASQL 208
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 155 VVQVLR-ECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
VV ++R +C++G + L GPP TGKT+ LA +++L GD
Sbjct: 71 VVDMIRLKCMAGRAV---LIAGPPATGKTAIALAMSQEL-GD 108
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L YGPPGTGKT A A +
Sbjct: 214 VLLYGPPGTGKTLCARAVANR 234
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL-NASDERGIQVVRDKVKSFA 361
+LFYGPPG GKT A A + F I +L + E ++ V DK ++ A
Sbjct: 520 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAA 576
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L +GPPGTGKT A A +
Sbjct: 247 ILLFGPPGTGKTLIARAVANE 267
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL-NASDERGIQVVRDKVKSFA 361
+LFYGPPG GKT A A + F I +L + E ++ V DK ++ A
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAA 575
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L +GPPGTGKT A A +
Sbjct: 246 ILLFGPPGTGKTLIARAVANE 266
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL-NASDERGIQVVRDKVKSFA 361
+LFYGPPG GKT A A + F I +L + E ++ V DK ++ A
Sbjct: 519 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAA 575
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQ 265
+L +GPPGTGKT A A +
Sbjct: 246 ILLFGPPGTGKTLIARAVANE 266
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 86 KPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPH---LLFYGPPGTGKTSAILAA 256
K P +E +R D +V + V+ E L L L+ GPPG+GKT +LAA
Sbjct: 2493 KVPTMEIESHRVAAADLVVPTIDTVR--HEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAA 2550
Query: 257 AK 262
+
Sbjct: 2551 LR 2552
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 86 KPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPH---LLFYGPPGTGKTSAILAA 256
K P +E +R D +V + V+ E L L L+ GPPG+GKT +LAA
Sbjct: 2493 KVPTMEIESHRVAAADLVVPTIDTVR--HEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAA 2550
Query: 257 AK 262
+
Sbjct: 2551 LR 2552
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/79 (34%), Positives = 38/79 (48%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKVKSFAQLTVSGK 382
LL GP G GK++ A+Q + +++NASD R + + +KV A T
Sbjct: 333 LLLSGPAGLGKSTLARIVARQ-----AGYSTIDVNASDARTVADL-NKVLEGAVKTSRTL 386
Query: 383 RADGRPCPSYKLVILDEAD 439
AD RP +ILDE D
Sbjct: 387 DADQRPA----CLILDEID 401
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 302 IPTRGLD*YLRRVALQRQVWHSFYRYPAVHKIVNAVDLHRINIPL 168
I R LD Y R+++ R V P +++NAV H I++ L
Sbjct: 301 IVVRALDRYFRKISTCRYVIPGLDFLPLTIELINAVSKHEIDLSL 345
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 302 IPTRGLD*YLRRVALQRQVWHSFYRYPAVHKIVNAVDLHRINIPL 168
I R LD Y R+++ R V P +++NAV H I++ L
Sbjct: 301 IVVRALDRYFRKISTCRYVIPGLDFLPLTIELINAVSKHEIDLSL 345
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 185 GGDLPH-LLFYGPPGTGKTSAILAAA 259
GG LP +L GPPGTGKT A A
Sbjct: 230 GGRLPKGVLLVGPPGTGKTLLARAIA 255
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAA 259
+L YGPPGTGKT A A
Sbjct: 191 VLLYGPPGTGKTLLARAVA 209
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAA 259
+L YGPPGTGKT A A
Sbjct: 212 VLLYGPPGTGKTLLARAVA 230
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL---FGD-ISRDRVLELNA 310
+L GPPGTGKTS A+ L D S+ +LE+N+
Sbjct: 175 ILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINS 214
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 167 LRECLSGGDLPH------LLFYGPPGTGKTSAILAAAKQLFGDISRD 289
+ + + GGD P LL +GP +GKTSAI + L+ D+ ++
Sbjct: 451 INKVIIGGDAPPSDDDKTLLLFGPVNSGKTSAITSMMNYLY-DVKKE 496
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 167 LRECLSGGDLPH------LLFYGPPGTGKTSAILAAAKQLFGDISRD 289
+ + + GGD P LL +GP +GKTSAI + L+ D+ ++
Sbjct: 425 INKVIIGGDAPPSDDDKTLLLFGPVNSGKTSAITSMMNYLY-DVKKE 470
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 122 KTIDDIVDQGEVVQVLRECLSGGDLPHLL--FYGPPGTGKTSAILAAAKQL 268
+ +DD+ ++ V++ L C + ++ F GPPG GKTS A A+ +
Sbjct: 305 EAMDDVKER--VLEHLAVCKMNNSVKGMILCFTGPPGIGKTSIAKAIAESM 353
>Z92785-2|CAB07200.1| 344|Caenorhabditis elegans Hypothetical
protein F31E9.4 protein.
Length = 344
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 2 KMQAFLKTGKISAGDKASTSGVKTTNKKKPPAPWVEKYRPKTIDD 136
K+Q F+K+ KI G + G K PW + TI+D
Sbjct: 35 KLQQFIKSMKIPTGGFSVFLGAHDRMIKSDQQPWGYSFNKSTIED 79
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 149 GEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGD 277
G +V++++E G LL G PG GKT+ +A +K+L D
Sbjct: 53 GLIVKMIQEGKIAGRA--LLVTGEPGAGKTAIAIAISKELGED 93
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAK 262
+L YGPPG GKT A A+
Sbjct: 117 ILLYGPPGCGKTLLAKAVAR 136
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAK 262
+L YGPPG GKT A A+
Sbjct: 120 ILLYGPPGCGKTLLAKAVAR 139
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 26 GKISAGDKASTSGVKTTNKKKPPAPWVEKYRPKTIDDIVDQGE 154
G +A K + S ++ K+KP PW + + D + +GE
Sbjct: 341 GSKNAAKKPAKSSLRMAQKQKPDQPWKKNLKDYETDRKLAKGE 383
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAA 259
+L +GPPGTGKT A A
Sbjct: 196 VLLFGPPGTGKTLLARAVA 214
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL 268
+L +GPPGTGKT K L
Sbjct: 333 ILLFGPPGTGKTLMARQIGKML 354
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL 268
+L +GPPGTGKT K L
Sbjct: 333 ILLFGPPGTGKTLMARQIGKML 354
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQL 268
+L +GPPGTGKT K L
Sbjct: 267 ILLFGPPGTGKTLMARQIGKML 288
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 185 GGDLPH-LLFYGPPGTGKTSAILAAA 259
G D P +L YGPPG GKT A A
Sbjct: 191 GIDPPRGVLMYGPPGCGKTMLAKAVA 216
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 203 LLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDER-GIQVVRDKVKSFAQLTVSG 379
L+ GP G GKT+ A AKQ R++ + R G ++ R+ ++ V
Sbjct: 819 LVLIGPSGVGKTALFRALAKQ-----ENMRIISIGPETGRSGSEIKRNLQEALRSHRVDQ 873
Query: 380 KRADGRPCPSYKLV 421
+ R P YK +
Sbjct: 874 QPHPTRTIPFYKTI 887
>AL021492-7|CAE17999.1| 282|Caenorhabditis elegans Hypothetical
protein Y45F10D.14 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 187 WRSTAFTILWTAGYR*NECHTCRCKATLR 273
W S+ LWT + N C+ CRC A R
Sbjct: 15 WISSCTGFLWTL-FGGNHCNCCRCPAAPR 42
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Frame = +1
Query: 235 NECH------TCR-CKATLRRYQSRPRVGIKC 309
NECH CR C A RRY P+ IKC
Sbjct: 14 NECHFGSRSQICRACSAFFRRYVLSPKSAIKC 45
>AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical
protein Y69A2AR.13 protein.
Length = 207
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 348 TLSLTTCIPRSSDAFNSNTRSRLISPKSCFAAASMALVLPVP 223
T+ T P+ +D N + P+ C+AA A V P+P
Sbjct: 52 TIWYCTIAPKHADRNLCNNVNTTHDPEVCYAAGDPACVKPIP 93
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 348 TLSLTTCIPRSSDAFNSNTRSRLISPKSCFAAASMALVLPVP 223
T+ T P+ +D N + P+ C+AA A V P+P
Sbjct: 122 TIWYCTIAPKHADRNLCNNVNTTHDPEVCYAAGDPACVKPIP 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,312
Number of Sequences: 27780
Number of extensions: 239562
Number of successful extensions: 924
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -