Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   5.2  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   5.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.0  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 459 VNIFYSVVLAKFVIIEYKYNHTSV 388
           + I YSV+LA ++   ++Y H+ V
Sbjct: 180 ITIAYSVILALWMFFRFQYKHSIV 203


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 155 FLLICAAVVELNPASNTKCTELTFE 81
           F +IC  + +++PA  ++CT   F+
Sbjct: 153 FCIICNYINKISPAIQSRCTRFRFQ 177


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 426 FVIIEYKYNHTSVQTYNS 373
           F+I  YKY H +++ YN+
Sbjct: 5   FLITGYKYRHLNLEAYNA 22


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +2

Query: 137 QHKSTGNKKKNEDASEN*G*LEALFTLFARLSTTNHGRMLLNFADLITYLYNIVSILEVS 316
           Q+   GNK+     S+    L  LF  F RL T      +LN   L T L+  +   E S
Sbjct: 107 QNSRKGNKRLKITISKKRSSLLLLFITFLRLGTPEIRLEILNSRKLTTPLFKGIYNDEPS 166

Query: 317 V 319
           V
Sbjct: 167 V 167


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 412 FYNNKFRQDYTIKNINKGKQYLIYSQFDNRRQEQ 513
           +YN   RQ     N+N  K   I+S  +   +EQ
Sbjct: 228 YYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQ 261


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 34  FFPYLQTNSKWNCSLISNVSSVHFVFDAGFSSTTAAQ 144
           F  +   +SKW C+L  + +S +   D GF+    +Q
Sbjct: 226 FIQFTMASSKWTCNLCGSENSFN---DDGFNPLVGSQ 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,219
Number of Sequences: 5004
Number of extensions: 38998
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)